Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  229 bits (585), Expect = 2e-64
 Identities = 165/539 (30%), Positives = 264/539 (48%), Gaps = 36/539 (6%)

Query: 118 DYDPRTRPWYKDAASAGKQIITTAYSDAIT---GALLVTIAEPVRLNGNMSGVVGADVLI 174
           ++  R   WY  A    K  +   Y   IT    AL+ ++  PV  +    GVVG DV +
Sbjct: 177 EFGIREAEWYLCAKETLKPCLMEPYLYEITPGNNALMTSLTVPVVKHKQFIGVVGVDVNL 236

Query: 175 D--QLIADVISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTIERAAN 232
              Q + D +S         + +    G  +A    S   +P   LS ++D +       
Sbjct: 237 PVFQALIDKLSKSLYDGQAKVTLLSTRGLVVAASHYSKKARP---LSESIDPKLAS---- 289

Query: 233 QGELLALKLNG---------VEKFFFFTAVPDTPWYFAVQMDSDTEYASHSELLTG---- 279
             +++AL  NG         +  +     +    W  A+Q+     + S  EL       
Sbjct: 290 --QIVALHKNGGYMANDDEIIVAYPIKIPLAKAEWSLAIQVPKAQAFKSSIELNDKMDEM 347

Query: 280 -------LITTALLITVIVVVIVSWLVSFLFRDLGRVSKALEEIASGDADLTQRLEPRSD 332
                  L+   L ++++ VV +S ++  +   L  +   +E +AS D DLTQ +   + 
Sbjct: 348 ATSLGSILLMVGLAVSILAVVTISIVIRSIIAPLKMIQGRVEHLASADGDLTQSIVVDAH 407

Query: 333 DEVGQLASNFNTFVSNMHTMVLKLSHVSAALAQQSKVTAAQAEERSSRIRLQQDEINMVA 392
            E+  L   FN+F+  +  ++ +L  ++    ++S  +A  AE     +  Q  EI  V 
Sbjct: 408 AELIALGKGFNSFIHKLKDLISELKTLAGRTQEESLSSAQIAELTHDSVHRQYGEIESVV 467

Query: 393 TAINEMAAATQEIAGNADHTAQNAGEAVTACVHGAGQ-VTQTQRSIQSLAEEVQVATEVI 451
           TA+NEM+A   E+A  ++ TA    EA++  V  + + +T+    + ++++E   A   +
Sbjct: 468 TAVNEMSATALEVAKASEQTAAET-EAMSRNVRLSEESLTKAMEYVTTMSQESMQAKVAV 526

Query: 452 QELEAHGHQISTILSTIQNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTH 511
            ++      IS IL  I +IA QTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ +T 
Sbjct: 527 SKVAESSTNISRILEVISSIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQ 586

Query: 512 ASTKEIQQMIETLQATTGKAVGIMDDSRRLADTSVDDANEASVSLEQIHKTVERISDMAT 571
           +ST +I  +I+ LQ     A GI+D     A  +V    +A  SL  +   +E IS   T
Sbjct: 587 SSTDDISVLIDALQQEVNSASGIIDKGAERAQMAVSQTEQALTSLNSMVSQIEEISSQVT 646

Query: 572 QIASAAEEQASVTSEITRNTVGIRDVSNDLAQEAHSAAEQAAELSELSHELEQEIRRFK 630
            IA+AAEEQ++VT E+ RN  GI D +++LA+ A  A + +  L+EL  +  Q++ + K
Sbjct: 647 HIAAAAEEQSAVTEEVNRNITGISDSASELARLAGEAQQSSVVLAELVKQQHQQLGKLK 705