Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 667 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  241 bits (616), Expect = 6e-68
 Identities = 178/596 (29%), Positives = 289/596 (48%), Gaps = 21/596 (3%)

Query: 55  AAKGISDWISIRKSISTAFNAHIEAQNVVPYLQQARNAG-GFDDIFYGTTDGAMYRSHPE 113
           A  G+ +W S   +  +      + Q+++ Y +   +       +F+G+ +   Y     
Sbjct: 74  AEPGLINWFSQYHARGSNLANDQQYQDIIRYFRSFSDRDTDVKSVFFGSANTFEYFDLNG 133

Query: 114 RNRAD--YDPRTRPWYKDAASAGKQIITTAYSDAITGALLVTIAEPVR-LNGNMSGVVGA 170
           R   D  Y    RPW+++A       +     DA  G++  T+  PV   NG + G+ G 
Sbjct: 134 RFDGDPNYYTNKRPWWQEAIDQRGLFVGDPAVDANDGSISATVKTPVYGANGELIGIGGM 193

Query: 171 DVLIDQLIADVISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMR----- 225
           D+LID +   +++    +N     +    G  +  P  S    P  +L++ +D +     
Sbjct: 194 DILIDTIGKTLLAPIKYRNYGQAFLMTDEGKLVYFPGFSDKFPP-GSLANQIDSQFKDTS 252

Query: 226 --TIERAANQGE---LLALKLNGVEKFFFFTAV----PDTPWYFAVQMDSDTEYASHSEL 276
             T  R   Q E      +  NGV +   F +V    P   W+ A  +  +   A  +E 
Sbjct: 253 GFTALRQQMQREAQGFAEVTFNGVPQRVTFVSVGGDYPKQKWHLAFMLPHEVIEAPVTEA 312

Query: 277 LTGLITTALLITVIVVVIVSWLVSFLFR-DLGRVSKALEEIASGDADLTQRLEPRSDDEV 335
                  AL I ++V + V WL+   FR  L ++  A+E+IA GD+DL+QR+    +DE+
Sbjct: 313 FWNACFVALGIMLLVGITV-WLMLLPFRRQLSKLLDAMEDIAEGDSDLSQRILMEREDEL 371

Query: 336 GQLASNFNTFVSNMHTMVLKLSHVSAALAQQSKVTAAQAEERSSRIRLQQDEINMVATAI 395
           G+L   FN F   +  M+L   +++  +           +   S +  Q+ +I+ VATA 
Sbjct: 372 GKLGDAFNRFAEKVQQMLLHTRNLTQEVGTGVMDARQVCDLAVSSVSSQKQQIDSVATAA 431

Query: 396 NEMAAATQEIAGNADHTAQNAGEAVTACVHGAGQVTQTQRSIQSLAEEVQVATEVIQELE 455
            +MA  +QE+A +A      A +A T    G   V++    +++L+ +V  A +VI+EL 
Sbjct: 432 TQMAQTSQEMAISAQRANDFAEKAQTQAHDGTQIVSRATEGMKALSVQVIEAAKVIKELR 491

Query: 456 AHGHQISTILSTIQNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTK 515
           +   QI  +LS I+NIA+QTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ RT  ST 
Sbjct: 492 SSSEQIGEVLSVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQDSTA 551

Query: 516 EIQQMIETLQATTGKAVGIMDDSRRLADTSVDDANEASVSLEQIHKTVERISDMATQIAS 575
            IQ +I+TLQ +  +A  +M+     A    D   +   +L  I   +  I     +I  
Sbjct: 552 NIQGIIQTLQQSALQAEQVMESGVEQARVGQDLTTQVEQALSDIASAIVSIQQQTVEITV 611

Query: 576 AAEEQASVTSEITRNTVGIRDVSNDLAQEAHSAAEQAAELSELSHELEQEIRRFKL 631
           A  +QA V  E+ +N V +R +S+     +   ++      + +HEL + I +FK+
Sbjct: 612 AIGQQAVVAEEVAQNVVSVRGLSDQSLLSSQDLSQSLQGFEQATHELTRNIGQFKI 667