Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  272 bits (695), Expect = 4e-77
 Identities = 174/514 (33%), Positives = 271/514 (52%), Gaps = 11/514 (2%)

Query: 121 PRTRPWYKDAASAGKQIITTAYSDAITGA-LLVTIAEPVRLNGNMSGVVGADVLIDQLIA 179
           P    W+     +G++ +   +++A     L +   +P     N  G+VG    +D ++ 
Sbjct: 133 PAQDGWFFGYRDSGQERMLNVFTEANGEVKLFINYQQP-----NGRGLVGLAKSLDDMVR 187

Query: 180 DVISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTIERAANQGE--LL 237
            + S    +     L+D + G    HPD S + K  ++L S      I    N+ +  L+
Sbjct: 188 LLGSFKIEETGFVYLVDAK-GEVKLHPDASQIGK--SSLKSLYSGANISSLLNRSDFNLI 244

Query: 238 ALKLNGVEKFFFFTAVPDTPWYFAVQMDSDTEYASHSELLTGLITTALLITVIVVVIVSW 297
             ++ G   F   + +P   WY   Q+     +A  ++    ++   L+I    +++   
Sbjct: 245 DTQIQGENTFVASSYIPSMDWYLVAQVPEAEVFALLTDAAYQILIWTLIIAAGFIMLAIV 304

Query: 298 LVSFLFRDLGRVSKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFVSNMHTMVLKLS 357
           +   + R + +V+    +I  G+ DL QRL  + +DE+ QLA  FN+F+S +   V++++
Sbjct: 305 VAGSVSRPIAQVAAMFRDIGEGEGDLRQRLPVKGEDEIAQLAQGFNSFISKIQDSVIEVA 364

Query: 358 HVSAALAQQSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQNAG 417
             S  L   +K  + QA++       Q+D   MV TAINEM A   EIA NA   A  A 
Sbjct: 365 QTSEQLGFSAKDVSNQAQQTLEDSHEQKDRTMMVVTAINEMGATVNEIASNAAQAAVAAK 424

Query: 418 EAVTACVHGAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQTNL 477
           +A T    G   VT+ + +I  L+++V+   EVI+ L  H   I  IL  I+ I+EQTNL
Sbjct: 425 DADTESNSGQVVVTRARDTINQLSQDVEQVGEVIESLATHTKSIGGILDVIRAISEQTNL 484

Query: 478 LALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIMDD 537
           LALNAAIEAARAGE GRGFAVVADEVR L+ RT AST E+Q MI+ LQ+   +AV  M  
Sbjct: 485 LALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTNEVQGMIDKLQSEASRAVNAMAQ 544

Query: 538 SRRLADTSVDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNTVGIRDV 597
           SR  +   V   +EAS SL  I   +  ISDM  Q+A+A EEQ++V  +I RN   I ++
Sbjct: 545 SRARSHEGVAAVDEASQSLVGISDRIGLISDMNIQVAAATEEQSTVVEDINRNVTEINEI 604

Query: 598 SNDLAQEAHSAAEQAAELSELSHELEQEIRRFKL 631
           +   A  A +AA+ +  L++L+H L+  + +FK+
Sbjct: 605 TQRTASTAQAAAQASLALNQLAHRLDTLVAKFKV 638