Pairwise Alignments

Query, 340 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., periplasmic binding protein/LacI transcriptional regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  226 bits (575), Expect = 8e-64
 Identities = 120/313 (38%), Positives = 195/313 (62%)

Query: 1   MARIKDVAELAGVNRSTVSRIINGEGKFKEETRRKVEQAMAQLNYRPSAIARSLATSSSN 60
           MA I DV+ LAGV+ +TVSR++N  GK  ++TR+KV  AMA+L+YRP+ IA+SLA++ SN
Sbjct: 1   MATIYDVSFLAGVSLATVSRVVNNTGKVSDKTRQKVHDAMAKLDYRPNTIAQSLASNRSN 60

Query: 61  MMGLLVTYYTGGFFGEMMEQVQTELDMHHKFLITAQGHHSAQGEREAIQRFHDLRCDGYV 120
            +G+LV+   G F+G MM +V++ L   +K +I A GH  A  E++ ++      CD  +
Sbjct: 61  SIGVLVSQLDGPFYGPMMREVESALRAANKHVIIAAGHSDAAQEKDGVEFLLSRGCDALI 120

Query: 121 LHSRYLSDDDLRALAQQPTPFVLLDRYVAGLEERCITFDHRGASQIVVEYLIQQGHRKIA 180
           + +  LS+  L  L Q  TP VL++R+V G++ERC+  ++     +   +++++GH++IA
Sbjct: 121 VDAEILSNGYLVELCQGKTPVVLINRHVDGIDERCVHLNNLQGGLLASRHVLEKGHKQIA 180

Query: 181 CITGPLHRHNSRLRQQGYLDALAQAGILPSKSLCEEGNYGRKSGYFAMQQLFARHPEITA 240
            I+GPL + ++R R +G+  ALA+ GI   ++L  EG++  + GY AM QL +R  + TA
Sbjct: 181 YISGPLFKLDARERLEGHRQALAEQGIAFDENLFYEGDFREEGGYEAMAQLLSRGRDFTA 240

Query: 241 VFSCSEEMTTGALQYLHEQGIAVPGRISIVSFDSVDLCESLYPTVTAVHFPISEMARAAV 300
           V   +++M +GA+    E+G+ VP  IS V FD++     + P +T V  PI +M R A 
Sbjct: 241 VVCANDQMASGAIAQCLERGLRVPEDISFVGFDNIPFPRYISPKLTTVCNPIQDMGRMAA 300

Query: 301 QSLIAMVKQQPTV 313
             ++  V  Q  V
Sbjct: 301 HWVLREVYDQTDV 313