Pairwise Alignments

Query, 446 a.a., PTS sugar transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 707 a.a., diguanylate phosphodiesterase (RefSeq) from Shewanella loihica PV-4

 Score =  105 bits (263), Expect = 4e-27
 Identities = 90/397 (22%), Positives = 172/397 (43%), Gaps = 42/397 (10%)

Query: 33  AMRDGFIVAMPFIIVGSFILIFAFPPFAEDTTNVFGRVWLNFAT----THFDIIMMPFNM 88
           A+++ FI  +PFI V S + +           +V+   W   A     + F  ++  F  
Sbjct: 14  AIKESFIALLPFIFVNSLLALIVA------LVDVWQPSWQGSAAYAWLSQFGRLLFSFFP 67

Query: 89  SMGIMTIFVSLGVAYSLAKAYKMDGITSAVLSLMSFLLVAAPAKE-----DSLSMAHMGG 143
            M ++++      ++  AK   +  +  A LS+ S + +     E     +         
Sbjct: 68  LMALLSL------SFHFAKYLHVSAVVVASLSIGSQIALHIHGSEAIDLSNGFDFLFGDA 121

Query: 144 TGIFTAVMCAFFAVELYRFMKKHNITIRMPEQVPPAIARSFEVLLPVLAIFLTLYPLSLF 203
             I T ++ A+    L R M    +++     +   +     + +P++  F+ +     +
Sbjct: 122 RAIITPILVAYL---LQRLMAIKALSLLQSTSLSSYLKLHLNLFIPLILCFVLVTTGIYW 178

Query: 204 VQAEYGMLIPDAVMAMFKPLISASNTLPAIIGALLVCQLLWFAGIHGAAIVVGLLSPIFL 263
           V    GM++   V ++     +AS+TL  +   +L   +LW  G+HG       ++ + +
Sbjct: 179 VGELLGMVLSPLVDSL-----AASSTLLQLFVRVLATHVLWCFGVHGD------IAYMLV 227

Query: 264 TNISANIDAFVTGQPVPNIFTQPFWDFYIFIGGSGATLALVI-LMSFSRSAHLKSIGRMS 322
             +   +      Q  PN+    F D ++ +GGSGAT +L+I L   S+  +  ++ +++
Sbjct: 228 LGVDNGLQ-----QVAPNLTLSQFTDLFVLLGGSGATHSLLIALFIASKDKNAVNVAKLA 282

Query: 323 AVPGFFQINEPVIFGSPVVMNPILFLPFVFAPVINATIAYFAIQLGFVGMGVATTPWTTP 382
                F INE +I+G P++ NP L LPFV  P+ N  I    I  G+V        W TP
Sbjct: 283 LPFALFNINEILIYGLPIIFNPRLMLPFVLVPLFNTLIGTLLIVSGWVSFAGNDFAWITP 342

Query: 383 AIIGASWGSGWTFTPVLLVVGLLILDLLIYLPFFKMF 419
             +   + +G T    L+ + L+   + IYLPF + +
Sbjct: 343 IFLN-GYVAGGTLALPLVQLLLVCAGVFIYLPFVRRY 378