Pairwise Alignments

Query, 446 a.a., PTS sugar transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 610 a.a., diguanylate phosphodiesterase (RefSeq) from Shewanella sp. ANA-3

 Score =  104 bits (259), Expect = 9e-27
 Identities = 83/331 (25%), Positives = 154/331 (46%), Gaps = 20/331 (6%)

Query: 92  IMTIFVSLGVAYSLAKAYKMDGITSAVLSLMSFLLVAAPAKEDSLSMAHMGGTGIFTAV- 150
           I  +   + +++  AK  ++  I    LSL   L + A    +  ++ ++        + 
Sbjct: 6   IFPLLALISLSFHFAKYLQLSAIVVCSLSLSILLAINAQDTGNVFNLDYVRAILADPRIA 65

Query: 151 MCAFFAVELYRFMKK-HNITIRMPEQVPPAIARSFEVLLPVLAIFLTLYPLSLFVQAEYG 209
           +    +  L RF+     + +   + +   + +   +  P++  F+ L+     V AE  
Sbjct: 66  VLPIISAYLLRFLSAWKGLQLIKAKALSRYLKQHLNLFFPIVIGFIGLFA----VVAEAS 121

Query: 210 MLIPDAVMAMFKPLISASNTLPAIIGALLVCQLLWFAGIHGAAIVVGLLSPIFLTNISAN 269
           + +        + L  AS  +   +  LL   +LW  G+HG    + L+           
Sbjct: 122 IFLEWLFAPFIEGLQQASLGVQLFMRILLT-HVLWCFGVHGDNAYLLLIG---------- 170

Query: 270 IDAFVTGQPVPNIFTQPFWDFYIFIGGSGATLALVILMSF-SRSAHLKSIGRMSAVPGFF 328
           +D  +  Q VP++    F D +I  GGSGATL+L+I +   ++ +  + I +++     F
Sbjct: 171 VDNGLM-QLVPHLTASQFMDLFILYGGSGATLSLIIAIFIGAKDSATRHIAKIATPFAIF 229

Query: 329 QINEPVIFGSPVVMNPILFLPFVFAPVINATIAYFAIQLGFVGMGVATTPWTTPAIIGAS 388
            INE +I+G P++ NP L +PF+ +P++N  +AY AI +G +     + PW TP ++ A 
Sbjct: 230 NINEILIYGLPIIFNPRLLVPFILSPLVNFILAYSAIHVGLLSFEGHSFPWITPPLLNAY 289

Query: 389 WGSGWTFTPVLLVVGLLILDLLIYLPFFKMF 419
             SG   + V   V L+ L +LIYLPF + F
Sbjct: 290 IASG-HMSAVFFQVLLIGLGVLIYLPFVRRF 319