Pairwise Alignments

Query, 540 a.a., BCCT family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 657 a.a., choline/carnitine/betaine transport from Pseudomonas stutzeri RCH2

 Score =  431 bits (1108), Expect = e-125
 Identities = 229/493 (46%), Positives = 325/493 (65%), Gaps = 11/493 (2%)

Query: 38  PVFGISAGLIAAFLLLTVLVDAHQAKIGLDTVKQSIIASFDWLFIWSGNLFLLFCVGLVI 97
           PVF  SA +I A ++ +V   +H   +  DT +  IIA+  WL+I +  L LL  V L  
Sbjct: 14  PVFYGSAVIILALVIYSVAFQSHAQTLFGDT-QAWIIANVSWLYILAVALILLMVVLLAF 72

Query: 98  SPFGKIRLGGQAAKADHSFLSWLAMLFAAGMGIGLMFWSVAEPVAYYTGWYETPLGVEAN 157
           S +G I+LG   ++ D+S L+W AMLF+AGMGIGLMF+ VAEPV ++      P G E  
Sbjct: 73  SRYGDIKLGPDHSEPDYSALTWFAMLFSAGMGIGLMFFGVAEPVMHFLS---PPTG-EGG 128

Query: 158 TPQAAQLAMGATMFHWGLHPWAIYGVVALSLAFFCYNKGLPLSMRSVFYPLLGDRAWGWA 217
           T  AA+ AM  T FHWGLH W+IY +VA+ LA+F Y  GLPL++RS  YPL+G+R +G  
Sbjct: 129 TTLAAREAMKITFFHWGLHAWSIYAIVAMILAYFAYRHGLPLTLRSALYPLIGERIYGPI 188

Query: 218 GHVVDILAVLATLFGLATSLGLGAQQAASGIHHVFGFESGIGLQIAVICVVTGLATLSVV 277
           GH VDI A++ T+ G+ATSLGLG  Q  +G++H++G    + +QI +I   T LAT+SVV
Sbjct: 189 GHAVDIFAIIGTVLGVATSLGLGVTQINTGLNHLYGLPISVPVQIGLIIATTLLATVSVV 248

Query: 278 RGIDGGVKVISNINMIVAFLLLALVAVIGYSV-TLTSIPTTLMAYLQNLIPLS-NPHGRE 335
            G+D GV+ +S +N+ +A LLL +V V G +V  L +      +YL +++  + N +  E
Sbjct: 249 TGLDKGVRRLSELNLTLAALLLLMVLVAGPTVFILQTFVQNTGSYLSDIVDKTFNLYAYE 308

Query: 336 DEVWFQGWTVFYWAWWISWSPFVGMFIARVSKGRTIREFIVAVLLIPTLVTLVWMSVFGG 395
              W  GWT+FYW WW++WSPFVG+FIAR+S+GRTIREF+  VLL+PT  TL+WM+VFG 
Sbjct: 309 PNDWIGGWTLFYWGWWLAWSPFVGLFIARISRGRTIREFVAGVLLVPTAFTLLWMTVFGD 368

Query: 396 LAVDQVINE-IGVLGQNGLTDVSLAMFQMFDSLVFGKVLSVIAVVLVLVFFITSSDSGSL 454
            A+  ++ E +  LG     D SLA+F   +   F  ++S+IA+++V+VFF+TS+DSG+L
Sbjct: 369 TAIHMILWEHVTSLGDAIEQDSSLALFAFLEHFPFSALISLIAIIMVVVFFVTSADSGAL 428

Query: 455 VIDSITSGGKLDSPVLQRVFWAVLEGAVAVALLWIGGTEAVQALQAGVISTALPFTVILL 514
           V+D + SGGK  +PV QR+FWA+  G VA+ALL   G   + ALQ   I++ALPFT+ LL
Sbjct: 429 VVDMLASGGKQGTPVWQRIFWAMSMGGVAIALLLADG---LTALQTATIASALPFTIALL 485

Query: 515 LMCVSLWKGLKTE 527
                L K L+ +
Sbjct: 486 CSMWGLLKALRLD 498