Pairwise Alignments

Query, 540 a.a., BCCT family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., choline/carnitine/betaine transport from Pseudomonas stutzeri RCH2

 Score =  367 bits (942), Expect = e-106
 Identities = 198/498 (39%), Positives = 299/498 (60%), Gaps = 15/498 (3%)

Query: 37  NPV-FGISAGLIAAFLLLTVLVDAHQAKIGLDTVKQSIIASFDWLFIWSGNLFLLFCVGL 95
           NPV F  SA  I  F + T+        + ++TV   I  +F W +  +  L+LLF V +
Sbjct: 19  NPVVFYGSAIAIVLFAVWTMFFTDRSLAV-INTVLGWISNTFGWFYFLAVLLYLLFVVVV 77

Query: 96  VISPFGKIRLGGQAAKADHSFLSWLAMLFAAGMGIGLMFWSVAEPVAYYTGWYETPLGVE 155
             S +GKIRLG   +K + + ++W AMLF+AG+GI L+F+ +AEP+   T + E P+G E
Sbjct: 78  ATSRYGKIRLGPDHSKPEFNVVTWAAMLFSAGIGIDLLFFCIAEPI---TQFLEPPVG-E 133

Query: 156 ANTPQAAQLAMGATMFHWGLHPWAIYGVVALSLAFFCYNKGLPLSMRSVFYPLLGDRAWG 215
             + QAA+ AM  T  HWGL  W +Y +V +SLA+F + +GLPLS+RS  YP+ G R +G
Sbjct: 134 GGSTQAARHAMELTFLHWGLSGWGVYTLVGMSLAYFSFRQGLPLSIRSSLYPIFGKRIYG 193

Query: 216 WAGHVVDILAVLATLFGLATSLGLGAQQAASGIHHVFGFESGIGLQIAVICVVTGLATLS 275
             GH VD  AVL T+FG+ATSLG+G  Q   G++++FG   G   Q  ++ ++   + +S
Sbjct: 194 PIGHTVDTAAVLGTIFGIATSLGIGIIQLNFGLNYIFGIPEGTLTQAVLVVLIVVFSAIS 253

Query: 276 VVRGIDGGVKVISNINMIVAFLLLALVAVIGYSV-TLTSIPTTLMAYLQNLIPLS--NPH 332
              G++ G++ +S  NM++A LLL  V V+G +V  L ++   +  Y  N I LS     
Sbjct: 254 AATGVERGIRRLSEFNMLLAVLLLLFVLVVGDTVFLLNALVMNVGDYFSNFISLSLDTYA 313

Query: 333 GREDEVWFQGWTVFYWAWWISWSPFVGMFIARVSKGRTIREFIVAVLLIPTLVTLVWMSV 392
            R    W   WTVF+WAWWI+W PFVG+F+AR+S+GRTIREF++  LL+P    + WMS+
Sbjct: 314 YRRPTDWLNAWTVFFWAWWIAWGPFVGLFLARISRGRTIREFVIGTLLLPLAFMMAWMSI 373

Query: 393 FGGLAVDQVINEIGVLGQNGLTDVSLAMFQMFDSLVFGKVLSVIAVVLVLVFFITSSDSG 452
            G  A++ V+      GQ  +++   +++    SL +  + +++  +L +VFF+TS DSG
Sbjct: 374 MGNSAIEMVMGGALEFGQQAVSNPGSSIYLFLQSLPWAGLTTIVVTILAIVFFVTSGDSG 433

Query: 453 SLVIDSITSGGK---LDSPVLQRVFWAVLEGAVAVALLWIGGTEAVQALQAGVISTALPF 509
           SLV+ + TS  K    D+PV  R+ WA + G + +ALL  GG   + ALQ  V+   LPF
Sbjct: 434 SLVLSNFTSILKDVNSDAPVWMRILWAAIIGVLTLALLIAGG---LTALQGTVVIMGLPF 490

Query: 510 TVILLLMCVSLWKGLKTE 527
           +++LL M   L+K L  E
Sbjct: 491 SIVLLFMMYGLFKALHVE 508