Pairwise Alignments

Query, 540 a.a., BCCT family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 685 a.a., choline/carnitine/betaine transport from Pseudomonas stutzeri RCH2

 Score =  397 bits (1021), Expect = e-115
 Identities = 214/496 (43%), Positives = 312/496 (62%), Gaps = 16/496 (3%)

Query: 38  PVFGISAGLIAAFLLLTVLVDAHQAKIGLDTVKQSIIASFDWLFIWSGNLFLLFCVGLVI 97
           PVF I A ++   L++  + +   A     +    I  +F W ++ S   FL+F VG+ +
Sbjct: 15  PVF-IPAVIVTLLLVIGTISNPELAGEVFSSTLAFITTNFGWFYMLSVAFFLVFIVGIAM 73

Query: 98  SPFGKIRLGGQAAKADHSFLSWLAMLFAAGMGIGLMFWSVAEPVAYYTGWYETPLGVEAN 157
           +P+G I+LG   A+  +SF +W AMLF+AG GI L+F+ VAEPV +Y     +P      
Sbjct: 74  TPWGSIKLGPDHAEPQYSFPAWFAMLFSAGYGIALLFFGVAEPVLHYA----SPPAGAGE 129

Query: 158 TPQAAQLAMGATMFHWGLHPWAIYGVVALSLAFFCYNKGLPLSMRSVFYPLLGDRAWGWA 217
           T  AA+ AM    FHWG H WAIYG+  L LA+F +  GLPLSMRS  YP++G+R  G  
Sbjct: 130 TVDAAKQAMQIAFFHWGFHIWAIYGLTGLVLAYFSFRHGLPLSMRSALYPIIGERIHGPI 189

Query: 218 GHVVDILAVLATLFGLATSLGLGAQQAASGIHHVF-GFESGIGLQIAVICVVTGLATLSV 276
           GHVVDI A+L TLFG+AT+LGL   Q  +GI++++      I +QI  I ++TGLA  SV
Sbjct: 190 GHVVDIFAILGTLFGIATTLGLSVTQINAGINYLWPSIPISINVQIIAIAIITGLAICSV 249

Query: 277 VRGIDGGVKVISNINMIVAFLLLALVAVIGYSV-TLTSIPTTLMAYLQNLIPLS---NPH 332
           V G+D GVK +S +NM++A  L+  V ++G S+  L +      +YL N+I  +     +
Sbjct: 250 VAGLDKGVKNLSLLNMVLAIGLMLFVFLVGPSIFILETFLQNTGSYLNNIIERTFNLQAY 309

Query: 333 GREDEVWFQGWTVFYWAWWISWSPFVGMFIARVSKGRTIREFIVAVLLIPTLVTLVWMSV 392
            R D  W   WT+F + W I+WSPFVG+FIA++S+GRTIR+F+  V+ +PT+ T +W SV
Sbjct: 310 SRSD--WIGNWTLFIFGWTIAWSPFVGLFIAKISRGRTIRQFVFGVMFVPTIFTFLWFSV 367

Query: 393 FGGLAVDQVINE-IGVLGQNGLTDVSLAMFQMFDSLVFGKVLSVIAVVLVLVFFITSSDS 451
           FG  A+  ++ E    L  +   D ++A+F++F+ L    + S +AVVL++ FF+TSSDS
Sbjct: 368 FGDTALHMIMVEGYTSLISDVQADNAIALFKLFELLPLTSIASFLAVVLIITFFVTSSDS 427

Query: 452 GSLVIDSITSGGKLDSPVLQRVFWAVLEGAVAVALLWIGGTEAVQALQAGVISTALPFTV 511
           GSLVIDS+ +GG L +PV QRVFWA +EG VA  LL  GG   + ALQ   I++ALPF +
Sbjct: 428 GSLVIDSLAAGGALHTPVWQRVFWASIEGIVASTLLLAGG---LSALQTMTIASALPFAI 484

Query: 512 ILLLMCVSLWKGLKTE 527
           I+++  + +W+ L  E
Sbjct: 485 IMMIAALGMWRALVIE 500