Pairwise Alignments

Query, 540 a.a., BCCT family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 658 a.a., choline/carnitine/betaine transport (RefSeq) from Shewanella amazonensis SB2B

 Score =  428 bits (1100), Expect = e-124
 Identities = 233/514 (45%), Positives = 335/514 (65%), Gaps = 15/514 (2%)

Query: 33  FDVHNPVFGISAGLIAAFLLLTVLVDAHQAKIGLDTVKQSIIASFDWLFIWSGNLFLLFC 92
           + ++ PVF  S  LI   + L  +    QA+     V+  +     WL++    +FL+F 
Sbjct: 5   YSINRPVFFGSLFLITLLVALGAIWP-QQAQQWFGAVQHWLEVKAGWLYVLGVAVFLVFI 63

Query: 93  VGLVISPFGKIRLGGQAAKADHSFLSWLAMLFAAGMGIGLMFWSVAEPVAYYTGWYETPL 152
           V +++S FG I+LG   A+ D+S+ SW+AMLF+AGMGIGLMF+ VAEPV +       P 
Sbjct: 64  VFVMVSRFGDIKLGPDHAEPDYSYKSWIAMLFSAGMGIGLMFFGVAEPVMHLIA----PP 119

Query: 153 GVEANTPQAAQLAMGATMFHWGLHPWAIYGVVALSLAFFCYNKGLPLSMRSVFYPLLGDR 212
                + +AA+ AM  T FHWG+H WAIY VVALSLA+F Y   LPL  RS  YPL+G+R
Sbjct: 120 DATPESIEAARQAMKITFFHWGIHAWAIYAVVALSLAYFAYRHKLPLLPRSALYPLIGER 179

Query: 213 AWGWAGHVVDILAVLATLFGLATSLGLGAQQAASGIHHVFG--FESGIGLQIAVICVVTG 270
             G  GH VD  AVL T+FG+ATSLG G  Q  +G++ +FG  F     LQ+ +I V+T 
Sbjct: 180 IHGPIGHAVDAFAVLGTMFGVATSLGFGVLQVNAGLNFLFGDQFPVSTPLQVGLIAVITL 239

Query: 271 LATLSVVRGIDGGVKVISNINMIVAFLLLALVAVIGYSVT-LTSIPTTLMAYLQNLIPLS 329
           +AT+SV  G+D GVK +S +N+++A +L+ +V ++G +V  L +I     AY  +++  +
Sbjct: 240 IATVSVFSGLDKGVKRLSELNLLLAVVLMLVVLLVGPTVALLQAIVQNTGAYFSDIVGKT 299

Query: 330 -NPHG-REDEVWFQGWTVFYWAWWISWSPFVGMFIARVSKGRTIREFIVAVLLIPTLVTL 387
            N +  ++   W  GWT+ YW WWISWSPFVG FIARVS+GRTIREF++ VL +P+  T 
Sbjct: 300 FNLYAYQQKNDWLGGWTLLYWGWWISWSPFVGTFIARVSRGRTIREFLLGVLFVPSGFTF 359

Query: 388 VWMSVFGGLAVDQVINEIG-VLGQNGLTDVSLAMFQMFDSLVFGKVLSVIAVVLVLVFFI 446
           +WM+VFG  A+DQ++++   VL     +DVS+A+F  F  L    +LS +A+ LV+ FF+
Sbjct: 360 LWMTVFGNSAIDQILHQGNTVLADAVSSDVSVALFVFFQQLPLTSLLSAVALCLVVTFFV 419

Query: 447 TSSDSGSLVIDSITSGGKLDSPVLQRVFWAVLEGAVAVALLWIGGTEAVQALQAGVISTA 506
           TSSDSGSLVID++TSGG + SPV QRVFWA+++G VA  LL  GG   +QALQ   I++A
Sbjct: 420 TSSDSGSLVIDNLTSGGDMSSPVWQRVFWALMQGVVASVLLLAGG---LQALQTAAIASA 476

Query: 507 LPFTVILLLMCVSLWKGLKTEPEFMASSKRLHQS 540
           +PF +++LL+C+ L+K L+ +     SS +LH +
Sbjct: 477 MPFLLVMLLICLGLFKALQ-DDWLKLSSVQLHHT 509