Pairwise Alignments

Query, 540 a.a., BCCT family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 514 a.a., L-carnitine/gamma-butyrobetaine antiporter (RefSeq) from Shewanella loihica PV-4

 Score =  181 bits (458), Expect = 8e-50
 Identities = 135/490 (27%), Positives = 237/490 (48%), Gaps = 26/490 (5%)

Query: 46  LIAAFLLLTVLV-DAHQAKIGLDTVKQSIIASFDWLFIWSGNLFLLFCVGLVISPFGKIR 104
           LIA  LL  + V D   A + +  V   +  S+ W F W      +    LV  P+   R
Sbjct: 29  LIAVILLSYLTVRDLDAANVVIKEVFHYLTHSWGWAFEWYMIALAIGWGWLVWGPYANNR 88

Query: 105 LGGQAAKADHSFLSWLAMLFAAGMGIGLMFWSVAEPVAYYTGWYETPLGVEANTPQAAQL 164
           LG +  K + S  SW+ ++FA+     +++W   E  AYY   Y  P  +++ + QA +L
Sbjct: 89  LGQE--KPEFSTGSWIFLMFASCTSAAVLYWGSLE--AYYYLTYP-PFEIQSMSVQAKEL 143

Query: 165 AMGATMFHWGLHPWAIYGVVALSLAFFCYNKGLPLSMRS-VFYPLLGDRAWGWAGHVVDI 223
            +  ++FHWG  PW  YG   ++L +F + K + +   S    P+LG    G  G  +D 
Sbjct: 144 GVAYSLFHWGPLPWMGYGFFTVALGYFLFVKKMDVVRPSGTLAPVLGKHHKGILGTFIDN 203

Query: 224 LAVLATLFGLATSLGLGAQQAASGIHHVFGFESGIGLQIAVICVVTGLATLSVVRGIDGG 283
           + V+A +  + TSLGL        I  +FG E  I +   VI V      + V  G+  G
Sbjct: 204 IYVVALILAMGTSLGLATPLVTECIQWLFGIERTIEVDTFVISVWIIFNAVCVAFGLTKG 263

Query: 284 VKVISNINMIVAFLLLALVAVIG---YSVT-LTSIPTTLMAYLQNLIPLSNPHGREDEVW 339
           +K+ S++   ++ ++L  V +IG   ++V   T     ++AYL  ++  ++    +   W
Sbjct: 264 IKIASDLRSYLSIIMLFWVFLIGATSFTVNYFTESVGVMLAYLPRMLFYTSSISADS--W 321

Query: 340 FQGWTVFYWAWWISWSPFVGMFIARVSKGRTIREFIVAVLLIPTLVTLVWMSVFGGLAV- 398
            Q WTVFYWAWW+ +   + +F+A++S+GRT+RE  + ++L  T  T    ++ G   V 
Sbjct: 322 PQDWTVFYWAWWVVYGIQMCIFLAKISRGRTVRELCLTMVLGLTASTWFLWTILGSNTVN 381

Query: 399 ---DQVINEIGVLGQNGLTDVSLAMFQMFDSLVFGKVLSVIAVVLVLVFFITSSDSGSLV 455
              + +IN   ++  +G      A+ + + +L    +      +L  +  +T  ++ S  
Sbjct: 382 LMHESIINMGQLIQDHG---APRAIIETWAALPMSTITMWGFFILCFLATVTLINACSYT 438

Query: 456 IDSITSGG---KLDSPVLQRVFWAVLEGAVAVALLWIGGTEAVQALQAGVISTALPFTVI 512
           +   T  G     + PV  RV W+VL G + + LL +GG   ++ LQ  +I+   P  ++
Sbjct: 439 LAMSTCKGADADNEPPVWIRVGWSVLVGVIGIVLLSLGG---LKPLQTAIIAGGAPLVIV 495

Query: 513 LLLMCVSLWK 522
            +L+ +S  K
Sbjct: 496 NILVIISFLK 505