Pairwise Alignments

Query, 540 a.a., BCCT family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 523 a.a., choline/carnitine/betaine transporter (RefSeq) from Shewanella loihica PV-4

 Score =  894 bits (2309), Expect = 0.0
 Identities = 428/521 (82%), Positives = 482/521 (92%)

Query: 7   MTKEIDKYSIDNTDYTVGQDNVQKWGFDVHNPVFGISAGLIAAFLLLTVLVDAHQAKIGL 66
           MTK IDKYSI++TDYT+GQDNVQKWGFDVHNPVFG+SAGLIAAFLL T+L DA  AK  L
Sbjct: 1   MTKGIDKYSIESTDYTIGQDNVQKWGFDVHNPVFGVSAGLIAAFLLATLLTDAETAKSVL 60

Query: 67  DTVKQSIIASFDWLFIWSGNLFLLFCVGLVISPFGKIRLGGQAAKADHSFLSWLAMLFAA 126
           D +K  II +FDWLFIWSGN+F++FC+GL++SP+GKIRLGG  A AD+SFLSWL+MLFAA
Sbjct: 61  DGIKWKIIGAFDWLFIWSGNIFVIFCLGLILSPYGKIRLGGNEATADYSFLSWLSMLFAA 120

Query: 127 GMGIGLMFWSVAEPVAYYTGWYETPLGVEANTPQAAQLAMGATMFHWGLHPWAIYGVVAL 186
           GMGIGLMFWSVAEPVAY+TGWYETPLGVE NTP+AA+LA+GATMFHWGLHPWAIYGVVAL
Sbjct: 121 GMGIGLMFWSVAEPVAYFTGWYETPLGVEPNTPEAAKLALGATMFHWGLHPWAIYGVVAL 180

Query: 187 SLAFFCYNKGLPLSMRSVFYPLLGDRAWGWAGHVVDILAVLATLFGLATSLGLGAQQAAS 246
           SLAFF YNKG+PLS+RS+FYPLLGDRAWGWAGH+VDILAVLATLFGLATSLGLGAQQAAS
Sbjct: 181 SLAFFTYNKGMPLSIRSIFYPLLGDRAWGWAGHIVDILAVLATLFGLATSLGLGAQQAAS 240

Query: 247 GIHHVFGFESGIGLQIAVICVVTGLATLSVVRGIDGGVKVISNINMIVAFLLLALVAVIG 306
           GIHHVFG E+ +GLQ+ VI  VT LA +SVVRGIDGGVKVISNINMIVAFLLL LVA+IG
Sbjct: 241 GIHHVFGIEASLGLQMIVIVAVTLLAVVSVVRGIDGGVKVISNINMIVAFLLLILVAMIG 300

Query: 307 YSVTLTSIPTTLMAYLQNLIPLSNPHGREDEVWFQGWTVFYWAWWISWSPFVGMFIARVS 366
           Y+V+L SIPTTLMAY++N+IPLSNPHGR DE WFQGWTVFYWAWWISWSPFVGMFIARVS
Sbjct: 301 YAVSLGSIPTTLMAYVENIIPLSNPHGRTDEAWFQGWTVFYWAWWISWSPFVGMFIARVS 360

Query: 367 KGRTIREFIVAVLLIPTLVTLVWMSVFGGLAVDQVINEIGVLGQNGLTDVSLAMFQMFDS 426
           KGRT+REFI AVLL+PT VTL+WMSVFGG+A+DQV+N++G LG  GLTDV LAMF+MFD 
Sbjct: 361 KGRTVREFITAVLLVPTAVTLIWMSVFGGMAIDQVVNKVGELGAKGLTDVPLAMFEMFDV 420

Query: 427 LVFGKVLSVIAVVLVLVFFITSSDSGSLVIDSITSGGKLDSPVLQRVFWAVLEGAVAVAL 486
           L FG +LS+IAVVLVLVFFITSSDSGSLVIDSIT+GGK+D+PV QRVFWA+LEGA+A+AL
Sbjct: 421 LPFGTLLSIIAVVLVLVFFITSSDSGSLVIDSITAGGKIDAPVPQRVFWALLEGAIAMAL 480

Query: 487 LWIGGTEAVQALQAGVISTALPFTVILLLMCVSLWKGLKTE 527
           LWIGGTEA+QALQAG ISTALPFTVILLLMCVSL KG++TE
Sbjct: 481 LWIGGTEAIQALQAGAISTALPFTVILLLMCVSLLKGMRTE 521