Pairwise Alignments

Query, 540 a.a., BCCT family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 658 a.a., choline/carnitine/betaine transporter (RefSeq) from Shewanella sp. ANA-3

 Score =  422 bits (1084), Expect = e-122
 Identities = 228/498 (45%), Positives = 326/498 (65%), Gaps = 13/498 (2%)

Query: 35  VHNPVFGISAGLIAAFLLLTVLVDAHQAKIGLDTVKQSIIASFDWLFIWSGNLFLLFCVG 94
           ++ PVF  S   I   +++  +    +A     +++  + A   WL+I    +FL+F + 
Sbjct: 7   INPPVFYSSVFFITLMVMICAIWPT-EANHFFKSMQSWLEAKAGWLYILGVAIFLIFIIF 65

Query: 95  LVISPFGKIRLGGQAAKADHSFLSWLAMLFAAGMGIGLMFWSVAEPVAYYTGWYETPLGV 154
           +++S FG I+LG   A  D+S+ SW+AMLF+AGMGIGLMF+ VAEPV +Y      P   
Sbjct: 66  VMVSRFGDIKLGPDHAVPDYSYKSWIAMLFSAGMGIGLMFFGVAEPVMHYLA----PPDA 121

Query: 155 EANTPQAAQLAMGATMFHWGLHPWAIYGVVALSLAFFCYNKGLPLSMRSVFYPLLGDRAW 214
              +  AA+ AM  T FHWG+H WAIYGVVALSLA+F Y   LPL  RS  YPL+G+R  
Sbjct: 122 TPESLAAAKEAMKITFFHWGIHAWAIYGVVALSLAYFAYRHKLPLLPRSALYPLIGERIH 181

Query: 215 GWAGHVVDILAVLATLFGLATSLGLGAQQAASGIHHVF-GFESGIGLQIAVICVVTGLAT 273
           G  GH VD  AVL T+FG+ATSLG G  Q  SG+ ++F    +   +Q+++I  +T LAT
Sbjct: 182 GPIGHCVDTFAVLGTMFGVATSLGFGVLQVNSGLSYLFEQLPNNTTVQVSLIIGITLLAT 241

Query: 274 LSVVRGIDGGVKVISNINMIVAFLLLALVAVIGYSV-TLTSIPTTLMAYLQNLIPLS-NP 331
           LSV  G+D GVK +S +N+ +A +LL +V ++G +V  L +      +YL +++  + N 
Sbjct: 242 LSVFSGLDKGVKRLSELNLGLALILLLIVLILGPTVMLLQAFVQNTGSYLSDIVNKTFNL 301

Query: 332 HG-REDEVWFQGWTVFYWAWWISWSPFVGMFIARVSKGRTIREFIVAVLLIPTLVTLVWM 390
           +  +  E W  GWT+ YW WWISWSPFVG FIARVS+GRTIREF+V +L +P+ +T +WM
Sbjct: 302 YAYQHKEDWLGGWTLLYWGWWISWSPFVGTFIARVSRGRTIREFLVGILFVPSALTFLWM 361

Query: 391 SVFGGLAVDQVINE-IGVLGQNGLTDVSLAMFQMFDSLVFGKVLSVIAVVLVLVFFITSS 449
           +VFG  A+D ++N+    L +   T+V +A+F  F+ + F  +LS I + LV+ FF+TSS
Sbjct: 362 TVFGNSAIDAIMNQGATYLSEAVNTNVPVALFVFFEHMPFPHLLSGIGICLVVTFFVTSS 421

Query: 450 DSGSLVIDSITSGGKLDSPVLQRVFWAVLEGAVAVALLWIGGTEAVQALQAGVISTALPF 509
           DSGSLVID++TSGG  ++PV QRVFWA+L+G VA  LL  GG   +QALQ   I++A+PF
Sbjct: 422 DSGSLVIDNLTSGGDNNAPVWQRVFWALLQGVVASVLLLAGG---LQALQTAAIASAMPF 478

Query: 510 TVILLLMCVSLWKGLKTE 527
             ++LLMC+ L+K LK +
Sbjct: 479 LCVMLLMCLGLYKALKDD 496