Pairwise Alignments

Query, 451 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  141 bits (356), Expect = 5e-38
 Identities = 96/326 (29%), Positives = 165/326 (50%), Gaps = 31/326 (9%)

Query: 1   MPLKAKLILLALLPLLIATASISWISIHQAKTLGQREIEIFRAKLMEERETSLKDSVEVA 60
           + L+ KL+LL+L PL+     +  +S +  +     E+  FR KL+ ER+  +K++ E+A
Sbjct: 4   LSLRNKLLLLSLFPLIFTLLVLITLSYYVEQESLAEEVVTFRTKLVGERKQQIKEATEIA 63

Query: 61  FDAVRLIANNPNLSEAEAKQQVKAVLTNIRYGSDGYFFAYDAQGTNLVHPIQPELVGQNL 120
              V     N  LS  + K  V   L +IR+GS GYFF YD+QG N+ H + P L GQN 
Sbjct: 64  SGIV-----NYQLSLKD-KGNVNQALRDIRFGSAGYFFMYDSQGKNIFHALMPNLEGQNK 117

Query: 121 WQLQDERGDFLIQALLFQAQSGGGYHQYLWRKPSSGETVPKLSYSAWLDDWEWMIGTGLY 180
             + D RG  +I  LL  A+ G G   Y ++KP++ E + K+S+   +   +WM+GTG Y
Sbjct: 118 IDMTDPRGTKIIVGLLDAAKRGDGNFSYYYQKPNTNEQIEKISFVMMVPGTDWMLGTGAY 177

Query: 181 IEDLSHEVEKMQAAVNANI-DTTFFSVVVILIVTVAVIIVLTLAINLHEHRLADKNLKDL 239
           I+D+   VE  +  V   + + +   +++ L++T A   V+ +A   H   +  KN+ D 
Sbjct: 178 IDDIEAVVEDYRQTVTEQMAEKSLMILLIALVLTGATAFVIMVA--AHRMVVPIKNMADN 235

Query: 240 VHKTVLFQEDEKKHLARELHDGINQL-----------------LVSSKCHLELLANQLND 282
           ++     + D  K L+ +  D I QL                 + S+   ++  AN ++D
Sbjct: 236 LNDIAKGEGDLTKRLSVKGEDEIAQLGRAFNLFVDKLQHIIGDVASATAKVKTAANAIHD 295

Query: 283 PKQIVHLEKSQHS-----LMTAINEV 303
             +++  +   H+     ++TAI E+
Sbjct: 296 QTKVMSSQLLSHNNETDQVVTAITEM 321