Pairwise Alignments

Query, 451 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  148 bits (374), Expect = 4e-40
 Identities = 96/324 (29%), Positives = 168/324 (51%), Gaps = 31/324 (9%)

Query: 3   LKAKLILLALLPLLIATASISWISIHQAKTLGQREIEIFRAKLMEERETSLKDSVEVAFD 62
           L+ KL+LLAL PL++    +  +S H  ++    E+  FR KL+ ER+T +K++ ++A  
Sbjct: 6   LRNKLLLLALFPLILTFIVLMTVSYHVEQSALADEVTTFREKLIGERKTQIKEATQIAAG 65

Query: 63  AVRLIANNPNLSEAEAKQQ--VKAVLTNIRYGSDGYFFAYDAQGTNLVHPIQPELVGQNL 120
            V+         +   K+Q  V   L +IR+GS GYFF YD+QG NL H + P L GQN 
Sbjct: 66  IVQY--------QLSLKEQGNVNQALRDIRFGSSGYFFLYDSQGKNLFHAVMPNLEGQNK 117

Query: 121 WQLQDERGDFLIQALLFQAQSGGGYHQYLWRKPSSGETVPKLSYSAWLDDWEWMIGTGLY 180
             + D RG  +I  LL  A++G G   + ++KP++ E + K+ YS  +   +WM+GTG Y
Sbjct: 118 IDMTDPRGTKIIVGLLNAAKNGDGNFSFYFQKPNTNEQIEKIGYSMMIPGTDWMLGTGAY 177

Query: 181 IEDLSHEVEKMQAAVNANIDTTFFSVVVILI----VTVAVIIVLTLAINLHEHRLAD--- 233
           I+D+   VE  +  V   +    +++++I +    +T  VI+V    +      +AD   
Sbjct: 178 IDDIDAVVEDYRTTVTEQMIDKSYAILLIALLLAAITAPVILVTAQRMVTPIKNMADNLN 237

Query: 234 ---KNLKDLVHKTVLFQEDEKKHLARELHDGINQL--LVSSKCH----LELLANQLNDPK 284
              K   DL  +  +  +DE   L R  +  +++L  ++    H    ++  AN ++D  
Sbjct: 238 DIAKGEGDLTKRLAVKGDDEIAQLGRSFNLFVDKLQTIIGDVAHATAKVKTAANAIHDQT 297

Query: 285 QIVHLEKSQHS-----LMTAINEV 303
           +++  +   H+     ++TAI E+
Sbjct: 298 KVMSRQLISHNNETDQVVTAITEM 321