Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., TRAP transporter, DctM subunit from Pseudomonas stutzeri RCH2

 Score =  198 bits (504), Expect = 2e-55
 Identities = 129/424 (30%), Positives = 216/424 (50%), Gaps = 15/424 (3%)

Query: 4   IVMFFVALFALL-LGFPVAFTFG--GIALIFGLWAEGIEMFAFMPYRIQSIMENTVLMAV 60
           I+  F ALF L+ +G PVA + G  G   I     + +   A    ++    E+  L+A+
Sbjct: 3   ILFLFAALFVLMFIGVPVAVSLGLAGSLTIMIFSQDSVRSLAI---KLFETSEHYTLLAI 59

Query: 61  PLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMG 120
           P F+  G  +    +A +L++      G I GG+AI  VL   L AA +G   A+V A+G
Sbjct: 60  PFFLLAGAFMTTGGVARRLIDFANACVGHIRGGLAIGAVLACMLFAALSGSSPATVAAVG 119

Query: 121 LISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALWPGL 180
            I++  M++  Y +    G +C +GTLG +IPPS+V+++        VG LF A + PG+
Sbjct: 120 SIAIAGMVRSGYPQAFGAGIVCNAGTLGILIPPSVVMVVYAAATETSVGKLFMAGVVPGI 179

Query: 181 MLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSIFAG 240
           +L  A +I I I A      A+P       +  +E + A +  I  L L+V++LG I++G
Sbjct: 180 LLGGALMIAIYIIAVKKNLPALP------RASFREWLSAARKAIWGLLLMVIILGGIYSG 233

Query: 241 VATPTESAALGGAGAILLAL-AYGQFSWSMVYDASKETVKVTAMVFAILLGATAFSMAFT 299
           + TPTE+AA+    +  +AL  Y   S         E+ K++ M+  I+  A  F+   T
Sbjct: 234 MFTPTEAAAVAAVYSAFVALFVYKDISLRDCPKVLLESGKLSIMLMFIIANAMLFAHVLT 293

Query: 300 YTGGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEICFIIVPILAPVAVLMDVD 359
                + +  W++      W FL+V  +V+LI G F++   I  I+ PIL P+A+ + +D
Sbjct: 294 TEQIPQAITAWVIEAGLQPWMFLLVVNIVLLIAGAFMEPSAIILILAPILFPIAIQLGID 353

Query: 360 MTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPFILIQILVLISLM 419
                I++ +N++   +TPP G +LF    V    VT   + R V+P++ + +  L+ + 
Sbjct: 354 PIHLGIIMVVNMEIGLITPPVGLNLFVASAVTGMPVT--QVIRAVLPWLALMLSFLVIIT 411

Query: 420 VFPS 423
             PS
Sbjct: 412 YVPS 415