Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., TRAP transporter, DctM subunit from Pseudomonas stutzeri RCH2

 Score =  417 bits (1072), Expect = e-121
 Identities = 222/445 (49%), Positives = 307/445 (68%), Gaps = 28/445 (6%)

Query: 2   IGIVMFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEMFAF-------MPYRIQSIMEN 54
           + I++F    FAL+ G+PVAFT GG+AL+F     G+   +F       +P RI  IM N
Sbjct: 5   MAILLFISICFALMSGYPVAFTLGGMALLFA--GVGVVTGSFDVGYLHALPNRIFGIMNN 62

Query: 55  TVLMAVPLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGA 114
             ++AVPLFVFMG++L+K+++AE LLESM RLFG + GG+AIS  +VG LLAASTG+VGA
Sbjct: 63  QTMLAVPLFVFMGVMLEKSRVAEDLLESMSRLFGTMRGGLAISVCVVGALLAASTGIVGA 122

Query: 115 SVVAMGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLG--------- 165
           +VV MGL++LP ML+  YD  +A GT+ A+GTLGQIIPPSI+L+LLGDV+          
Sbjct: 123 TVVTMGLLALPTMLRRGYDPAIATGTLAATGTLGQIIPPSIILVLLGDVMSSAFQQAQLK 182

Query: 166 --------VPVGDLFQAALWPGLMLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVV 217
                   V VGDLF  AL PGL+LV  YI+Y++  A   P+  +P  P  +L    E  
Sbjct: 183 MGIFSPKTVSVGDLFVGALIPGLLLVGMYILYLIAVAIFQPKK-LPALPQEELGPI-EWG 240

Query: 218 KALKAVIPPLALIVVVLGSIFAGVATPTESAALGGAGAILLALAYGQFSWSMVYDASKET 277
           K + +++PPLALI  VLGSI AG ATPTE+AA+G  GA LL++A GQ +++ +   +  T
Sbjct: 241 KLIGSLLPPLALITAVLGSILAGYATPTEAAAIGALGATLLSIAKGQLNFTQLKQVAFGT 300

Query: 278 VKVTAMVFAILLGATAFSMAFTYTGGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFID 337
            ++T+MVF IL+GA+ FS+ F   GG+ L+E+ + +LPG   G  +V MLVI +LGF +D
Sbjct: 301 TEITSMVFLILIGASLFSLVFRGFGGEVLIEDALHSLPGGVLGAFLVVMLVIFLLGFILD 360

Query: 338 FVEICFIIVPILAPVAVLMDVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTT 397
           F+EI F++VPI+ P+ + M +D  W  ++ A+NLQTSFLTPPFGFSLFYL+GV P+SV T
Sbjct: 361 FIEIIFVVVPIVGPILLAMGLDPVWLGVMFAINLQTSFLTPPFGFSLFYLRGVTPRSVPT 420

Query: 398 MDIYRGVVPFILIQILVLISLMVFP 422
             +Y+GV+PFI IQI +L+   ++P
Sbjct: 421 SVMYKGVLPFIAIQIGMLVVAYMWP 445



 Score = 24.3 bits (51), Expect = 0.008
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 111 VVGASVVAMGL--ISLPVMLKYRYDKGLACGTICAS-----GTLGQIIPPSIVLILLGDV 163
           +VG  ++AMGL  + L VM                S     G   + +P S++   +   
Sbjct: 371 IVGPILLAMGLDPVWLGVMFAINLQTSFLTPPFGFSLFYLRGVTPRSVPTSVMYKGVLPF 430

Query: 164 LGVPVGDLFQAALWPGLM 181
           + + +G L  A +WPG++
Sbjct: 431 IAIQIGMLVVAYMWPGIV 448