Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 425 a.a., D-gluconate TRAP transporter, large permease component (from data) from Pseudomonas stutzeri RCH2

 Score =  159 bits (402), Expect = 2e-43
 Identities = 108/425 (25%), Positives = 205/425 (48%), Gaps = 17/425 (4%)

Query: 4   IVMFFVALFALL-LGFPVAFTF--GGIALIFGLWAEGIEMFAFMPYRIQSIMENTVLMAV 60
           +V+F  +L   + LG P+AF     G  L++ L    +++ A     +Q+  ++  L+AV
Sbjct: 3   VVVFLSSLLGFMTLGMPIAFALLLTGSVLMWYLDFWDVQLLA---QNLQAGADSFPLLAV 59

Query: 61  PLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMG 120
           P F+  G ++    ++ +++      FG   GG+    +    LLA+ +G   A   A+ 
Sbjct: 60  PFFILAGELMNAGGISRRIIAMAQAYFGHKRGGLGYVAIAASVLLASMSGSALADTAALA 119

Query: 121 LISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALWPGL 180
            + LP+M +  Y    + G + A G +  IIPPS+  ++ G V G  +  LF A + PGL
Sbjct: 120 TLLLPMMRERGYPLSSSSGLVAAGGIIAPIIPPSMPFVIYGVVTGTSISQLFLAGMVPGL 179

Query: 181 MLVAAYII-YILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSIFA 239
           ++    I+ + LI  +++       EP  + +   E  + L      L L V+++G +  
Sbjct: 180 IMGMGLIVAWTLIARRID-------EPKQEKASAAERRRVLVDGAAALMLPVIIVGGLRG 232

Query: 240 GVATPTESAALGGAGAILLA-LAYGQFSWSMVYDASKETVKVTAMVFAILLGATAFSMAF 298
           G+ TPTE+A +    A+ ++ L Y + +W+ + +      + TA V  +   AT  +   
Sbjct: 233 GLFTPTEAAVVAAVYALAVSTLLYRELNWAGLVEVLTRASRTTASVMFLCAAATVSAYMI 292

Query: 299 TYTGGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEICFIIVPILAPVAVLMDV 358
           T     + +   +  L  D    ++  ML+++ +G  +D      I+ P+LAP+A+   +
Sbjct: 293 TLAQLPDEIAAMLGPLAQDPKLLMVAIMLLMIAVGMVLDLTPTILILGPVLAPIAIKAGI 352

Query: 359 DMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPFILIQILVLISL 418
           D  +F ++  +      +TPP G  L  + G+    + T  + RGV+PF LI ++++  L
Sbjct: 353 DPVYFGVMFVLIGSIGLITPPVGTVLNVVGGIGRLRMET--LVRGVMPFFLIYLVIVGLL 410

Query: 419 MVFPS 423
           +  PS
Sbjct: 411 IAVPS 415