Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., C4 dicarboxylate ABC transporter permease (RefSeq) from Shewanella amazonensis SB2B

 Score =  419 bits (1076), Expect = e-121
 Identities = 219/445 (49%), Positives = 302/445 (67%), Gaps = 26/445 (5%)

Query: 2   IGIVMFFVALFALLLGFPVAFTFGGIALIFGLWAE-----GIEMFAFMPYRIQSIMENTV 56
           + +++F +    L+LG+PVA T GG+A +F L+A       + +F  +P RI  I+ N +
Sbjct: 1   MALLLFLIICLVLMLGYPVALTLGGVAFLFALFASFFGAFDMGLFGLLPNRIFGILNNQI 60

Query: 57  LMAVPLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASV 116
           LMAVPLFVFMG+VL+K+++AEQLL +MG L G   GG+  S   VG LLAASTG+VGA+V
Sbjct: 61  LMAVPLFVFMGVVLEKSRIAEQLLTTMGALLGRFRGGLIFSVFFVGVLLAASTGIVGATV 120

Query: 117 VAMGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLG----------- 165
           V MGL+SLP +LK  Y   L+ G ICA+GTLGQIIPPSI L+LLGDVL            
Sbjct: 121 VTMGLMSLPTLLKRGYSPELSAGAICATGTLGQIIPPSIALVLLGDVLSNAYQQAQLKMG 180

Query: 166 ------VPVGDLFQAALWPGLMLVAAYIIYILIYAKLNP-QAAMPIEPDADLSRRQEVVK 218
                 V VGDLF  AL PGLMLV+ Y+ Y L     +P      I  D + +    V+ 
Sbjct: 181 IFNPKSVSVGDLFAGALIPGLMLVSLYMFYTLFRLWRSPADFGSAITQDYEPASLARVIS 240

Query: 219 ALKAVIPPLALIVVVLGSIFAGVATPTESAALGGAGAILLALAYGQFSWSMVYDASKETV 278
           AL   +PPL LI +VLGSI AG+ATPTE+A++G AGA+L+AL   Q S   + +  + TV
Sbjct: 241 AL---LPPLLLIFLVLGSILAGIATPTEAASVGAAGALLIALLKRQMSMLALKEVMQSTV 297

Query: 279 KVTAMVFAILLGATAFSMAFTYTGGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDF 338
           K+T+MVF IL+GA+ FS+ F   GG+EL+     N+PG   G +++ M VI +LGF +DF
Sbjct: 298 KITSMVFLILIGASVFSLVFRGLGGEELIHNLFANMPGGVVGAMLLVMTVIFVLGFILDF 357

Query: 339 VEICFIIVPILAPVAVLMDVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTM 398
           +EI F++VP++AP+ + M +D  W  I+IA+NLQTSFLTPPFGF+LFYL+GV+  SV++ 
Sbjct: 358 IEITFVVVPLVAPILLAMGLDPVWLGIMIALNLQTSFLTPPFGFALFYLRGVSGDSVSSG 417

Query: 399 DIYRGVVPFILIQILVLISLMVFPS 423
            IYRGV+PF+++Q+L+LI L ++P+
Sbjct: 418 QIYRGVIPFVILQLLMLILLGIWPA 442