Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., TRAP dicarboxylate transporter, DctM subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  187 bits (474), Expect = 7e-52
 Identities = 123/430 (28%), Positives = 212/430 (49%), Gaps = 24/430 (5%)

Query: 1   MIGIVMFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEMFAFMPYRIQSI-------ME 53
           M  +++F + L  +L G P++ + G   L F        +F      I+S+       +E
Sbjct: 1   MSALIIFTLLLCLMLTGMPISISLGLTVLTF--------LFTMTTVPIESVALKLFTGIE 52

Query: 54  NTVLMAVPLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVG 113
              +MA+P F+  G  L    +A++++     + G  +GG+ +  V+   L AA +G   
Sbjct: 53  KFEIMAIPFFILAGNFLTHGGVAKRMINFATAMVGHWYGGLGLGGVVACALFAAISGSSP 112

Query: 114 ASVVAMGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQ 173
           A+VVA+G I LP M+K  + +    G I  SG LG +IPPS+V+++        VG LF 
Sbjct: 113 ATVVAIGSILLPAMVKQGFPRRFGAGVITTSGALGILIPPSLVMVMYAVATNTSVGALFM 172

Query: 174 AALWPGLMLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVV 233
           A + PGL+L     +   + A+ N     P  P A  + R    KA +  I  L L+V+V
Sbjct: 173 AGVVPGLVLATLLGVTTSVIARKN---NYPRLPKASWATR---AKAFREAIWGLMLVVIV 226

Query: 234 LGSIFAGVATPTESAALGGAGAILLAL-AYGQFSWSMVYDASKETVKVTAMVFAILLGAT 292
           +G I++G+ TPTE+AA+    A L+A+  Y       V      +  ++AM+  I+  A 
Sbjct: 227 IGGIYSGIFTPTEAAAMSAVYAFLIAVFVYKDMPLRGVVKILLSSASMSAMLLYIITNAV 286

Query: 293 AFSMAFTYTGGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEICFIIVPILAPV 352
            FS         + + +W++        FL+V  +++L  G F++   I  I+ PIL PV
Sbjct: 287 LFSFVLANENIPQAIADWIVGKELGIVAFLLVVNVLLLAAGNFMEPSSIVLIMAPILFPV 346

Query: 353 AVLMDVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPFILIQI 412
           A+ + +D   F ILI +N++     PP G +L+   G+    ++ + +   V+P++L  +
Sbjct: 347 AMKLGIDPVHFGILIIVNMEVGMCHPPVGLNLYVASGITKMGISELTV--AVMPWLLTML 404

Query: 413 LVLISLMVFP 422
             LI +  +P
Sbjct: 405 GFLIVVTYWP 414