Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 613 a.a., TRAP transporter large permease subunit from Rhodopseudomonas palustris CGA009

 Score =  202 bits (515), Expect = 2e-56
 Identities = 117/271 (43%), Positives = 160/271 (59%), Gaps = 30/271 (11%)

Query: 5   VMFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEMFAF-------MPYRIQSIMENTVL 57
           +MF   +  LLLG+PVAF+     L+F     GIE+  F       +P R+  +M N  L
Sbjct: 12  IMFASLVVFLLLGYPVAFSLAANGLLFAFL--GIELGLFRPDFLQALPDRVYGVMNNETL 69

Query: 58  MAVPLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVV 117
           +A+P F +MGLVL+++ +AE LLE++G+LFG I GG+A + V VG LLAA+TGVV ASV+
Sbjct: 70  LAIPFFTYMGLVLERSGMAEDLLETIGQLFGSIRGGIAYAVVFVGALLAATTGVVAASVI 129

Query: 118 AMGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALW 177
           +MGLISLP+ML+Y YD+ +A G I ASGTL QIIPPS+VLI++ D LG  VGD+++ A  
Sbjct: 130 SMGLISLPIMLRYGYDRRVATGIIAASGTLAQIIPPSLVLIVMADQLGRSVGDMYEGAFI 189

Query: 178 PGLMLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSI 237
           PG++L   Y  YI +     P+AA  +  +A   R  E   A   +I PLA         
Sbjct: 190 PGIVLSLLYAFYIFLVTIFAPKAAPGLPLEAQTLREPET--ARHPLIMPLA--------- 238

Query: 238 FAGVATPTESAALGGAGAILLALAYGQFSWS 268
                     A   G  A L  + +G F WS
Sbjct: 239 ----------ALSAGGAAYLFVVHWGAFDWS 259



 Score =  201 bits (511), Expect = 5e-56
 Identities = 98/213 (46%), Positives = 141/213 (66%), Gaps = 13/213 (6%)

Query: 223 VIPPLALIVVVLGSIFAGVATPTESAALGGAGAILLALAYGQFSWSMVYDASKETVKVTA 282
           ++PPL LI +VLG+IF GVATPTE  A+G AGA+LLAL  G+ S+ +   A++ T K+TA
Sbjct: 364 MVPPLGLIFLVLGTIFIGVATPTEGGAMGAAGAMLLALMKGRLSFDLTRQATESTAKLTA 423

Query: 283 MVFAILLGATAFSMAFTYTGGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEIC 342
            V  IL+GA  FS+ F    G   VEE +++LPG + GFLI     + +L FF+DF E+ 
Sbjct: 424 FVVMILVGARVFSLTFYGVDGHRWVEELLVSLPGGQLGFLIFVNAFVFVLAFFLDFFELA 483

Query: 343 FIIVPILAPVAVLMDVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPK--------- 393
           FI++P+L P A  + +D+ WF +++ +N+QTSF+ PPFGF+LFYL+ VAPK         
Sbjct: 484 FIVIPLLGPAAEKLGIDLIWFGVMLGVNMQTSFMHPPFGFALFYLRSVAPKLPYIDRVSG 543

Query: 394 ----SVTTMDIYRGVVPFILIQILVLISLMVFP 422
                VTT  IY G VPF++IQ++++  +  FP
Sbjct: 544 KQMAPVTTGQIYWGSVPFVIIQLIMVALVNAFP 576