Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 785 a.a., TRAP transporter, subunit DctM from Phaeobacter inhibens DSM 17395

 Score =  174 bits (442), Expect = 7e-48
 Identities = 135/376 (35%), Positives = 197/376 (52%), Gaps = 43/376 (11%)

Query: 62  LFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMGL 121
           L V MGLVL   +      +    + G I  GV +   LV  +  A T   G +V+   L
Sbjct: 428 LMVLMGLVLAVGRGVSPSSDPKPLILGAI--GVLL-IALVDVVAIAPTTSPGITVL---L 481

Query: 122 ISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLI-LLGDVLGVPVGDLFQAALWPGL 180
           I+LP +L   Y   +A G    +  +  + PP I+++ +LG +LG        AAL  G 
Sbjct: 482 IALPTLLAL-YGCRIAAGRSARNDLIRVVFPPLILIVAVLGSILGGITNPTPAAALGAGG 540

Query: 181 MLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSIF-- 238
            ++ A       Y KL  Q              + ++ A  AV      I +++G  F  
Sbjct: 541 AIMLA------AYRKLQDQG----------KSGKIIIWATFAVA-----ICILVGVNFDL 579

Query: 239 -----AGVATPTESAALGGAGAILLAL---AYG---QFSWSMVYDASKETVKVTAMVFAI 287
                +GV+  T  A     GA L AL    YG    F   ++    +ET KVT+MVF I
Sbjct: 580 RINGRSGVSAETVIAFGVAYGAYLFALFGLLYGCWVLFKGGVLTPVVRETAKVTSMVFTI 639

Query: 288 LLGATAFSMAFTYTGGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEICFIIVP 347
           L+G+   ++     GG+  +++++ +   +   FLIV M+V+ ILGF +DF+EI +I++P
Sbjct: 640 LIGSQLLNLVVISFGGEHYIQQFLKSFDSELKVFLIV-MVVLFILGFVLDFLEIIYIVIP 698

Query: 348 ILAPVAVLMDVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPF 407
           I+ PV      D  W  I++A+NLQTSFLTPPFGF+LFYL+GVAPK VTT  IYRGV+PF
Sbjct: 699 IVGPVIYGGSFDPKWVTIMVAVNLQTSFLTPPFGFALFYLRGVAPKEVTTAHIYRGVLPF 758

Query: 408 ILIQILVLISLMVFPS 423
           +LIQ++ L  L +FPS
Sbjct: 759 VLIQVVGLGILWMFPS 774



 Score =  154 bits (388), Expect = 1e-41
 Identities = 85/173 (49%), Positives = 109/173 (63%), Gaps = 28/173 (16%)

Query: 57  LMAVPLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASV 116
           L+AV +FV MG+ L+++K+A  LL +M R+FG + GG+A+S V+VG  LAASTG+VGA+V
Sbjct: 126 LLAVLMFVLMGITLERSKIANDLLTTMARVFGPLPGGLAVSIVVVGAFLAASTGIVGATV 185

Query: 117 VAMGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLG----------- 165
           V MGL++LP ML+  Y   LA G I ASGTLGQIIPPSIV++LLG + G           
Sbjct: 186 VTMGLLALPTMLRNNYSPELATGVIAASGTLGQIIPPSIVIVLLGTLAGDLYSTAQEARA 245

Query: 166 -----------------VPVGDLFQAALWPGLMLVAAYIIYILIYAKLNPQAA 201
                            V VG LFQAAL PG+ML   Y +Y   YA LNP+ A
Sbjct: 246 QEFGCSDALTYLGEPAVVSVGTLFQAALLPGIMLALLYALYAFGYALLNPEKA 298