Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) from Shewanella loihica PV-4

 Score =  176 bits (447), Expect = 1e-48
 Identities = 126/455 (27%), Positives = 215/455 (47%), Gaps = 44/455 (9%)

Query: 4   IVMFFVALF-ALLLGFPVAFTFGGIALIFGLWAEGIEMFAFMPYRIQSIMENTVLMAVPL 62
           I   F++LF  +LLG P+A   G  +++  L      + +      +S  E+  L+A+P 
Sbjct: 3   IATLFISLFLCMLLGMPIAIALGFSSMLTILLFSDDSLASVALKLYESTSEHYTLLAIPF 62

Query: 63  FVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMGLI 122
           F+     L    +A ++++      G I GG+A+++V+   L AA +G   A+V A+G I
Sbjct: 63  FILSSAFLSTGGVARRIIDFAMDSVGHIRGGLAMASVMACMLFAAVSGSSPATVAAIGSI 122

Query: 123 SLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALWPGLML 182
            +  M++  Y +  A G I  SGTLG +IPPSIV+++      V    +F A L PGLM+
Sbjct: 123 VIVGMVRAGYPEKFAAGVITTSGTLGILIPPSIVMLVYAAATEVSAARMFMAGLIPGLMM 182

Query: 183 VAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSIFAGVA 242
               ++ I I A++    + P         R   + + KA +  LALIV+VLGSI+ G+A
Sbjct: 183 GLLLMLAIYIVARIKKLPSRPFP-----GFRPLAISSAKA-MGGLALIVIVLGSIYGGIA 236

Query: 243 TPTESAALGGAGAILLAL-------AYGQFSW---------------------------- 267
           +PTE+AA+    A  +A+            SW                            
Sbjct: 237 SPTEAAAVACVYAYFIAVFGYRDIGPLKNVSWRDSGEPLIRAILRNLGFMVLAVFKTPAD 296

Query: 268 SMVYDASKETVKVTAMVFAILLGATAFSMAFTYTGGDELVEEWMMNLPGDKWGFLIVTML 327
             +    ++  KV+ M+  I+  A  F+   T      L+ E ++ +    WGFLI+  L
Sbjct: 297 KEIRHVVRDGAKVSIMLLFIIANAMLFAHVLTTERIPHLIAETIVGMGLPVWGFLIIVNL 356

Query: 328 VILILGFFIDFVEICFIIVPILAPVAVLMDVDMTWFAILIAMNLQTSFLTPPFGFSLFYL 387
           ++L  G F++   I  I+ PIL P+A  + +D     I++ +N++   LTPP G +LF  
Sbjct: 357 LLLAAGNFMEPSAILLIMAPILFPIATQLGIDPIHLGIIMVVNMEIGMLTPPVGLNLFVT 416

Query: 388 KGVAPKSVTTMDIYRGVVPFILIQILVLISLMVFP 422
            G+  +S+    +    +P++ + +  L  +   P
Sbjct: 417 AGITGRSMGW--VIHSCIPWLALLLFFLALITYIP 449