Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., C4-dicarboxylate transport protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  180 bits (456), Expect = 9e-50
 Identities = 125/452 (27%), Positives = 218/452 (48%), Gaps = 43/452 (9%)

Query: 6   MFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEMFAFMPYRIQSIMENTVLMAVPLFVF 65
           +F V    + LG P+A   G  +++  L+     + +      +S  E+  L+A+P F+ 
Sbjct: 6   LFCVLFICMFLGMPIAIALGFSSMLTILFFSNDSLASVALKLYESSSEHYTLLAIPFFIL 65

Query: 66  MGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMGLISLP 125
               L    +A ++++      G I GG+A+++V+   L AA +G   A+V A+G I + 
Sbjct: 66  SSAFLSTGGVARRIIDFAMDCVGHIRGGLAMASVMACMLFAAVSGSSPATVAAIGSIVIV 125

Query: 126 VMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALWPGLMLVAA 185
            M+K  Y +  A G I  SGTLG +IPPSIV+++      V V  +F A L PGL+L   
Sbjct: 126 GMVKAGYPEKFASGVITTSGTLGILIPPSIVMLVYAAATEVSVAKIFMAGLVPGLLLGFL 185

Query: 186 YIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSIFAGVATPT 245
            ++ I I A++    ++P      L      V + KA I  LALI +VLGSI+ GVA+PT
Sbjct: 186 IMVVIYIVARIKNLPSIPFPGFKKLG-----VSSAKA-IGGLALIFIVLGSIYGGVASPT 239

Query: 246 ESAALGGAGAILLAL-------AYGQFSWSMVYDA------------------------- 273
           E++A+    A  +A+            +W    +A                         
Sbjct: 240 EASAVACVYAYFIAVFGYRDIGPLKNVAWRNPNEAIPSAIARNLGHMVLGLIKTPIDKEI 299

Query: 274 ---SKETVKVTAMVFAILLGATAFSMAFTYTGGDELVEEWMMNLPGDKWGFLIVTMLVIL 330
               ++  KV+ M+  I+  A  F+   T      ++ E+++ +    WGFLI+  L++L
Sbjct: 300 RHVVRDGAKVSIMLLFIIANAMLFAHVLTTERIPHIIAEYIVGMGLPAWGFLIIVNLLLL 359

Query: 331 ILGFFIDFVEICFIIVPILAPVAVLMDVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGV 390
             G F++   I  I+ PIL P+A  + +D     I++ +N++   LTPP G +LF   G+
Sbjct: 360 AAGNFMEPSAIVLIMAPILFPIATQLGIDPIHLGIIMVVNMEIGMLTPPVGLNLFVTSGI 419

Query: 391 APKSVTTMDIYRGVVPFILIQILVLISLMVFP 422
             +++    + + V+P+++  +  L+ +   P
Sbjct: 420 TGRNIGW--VIQSVLPWLVFMLAFLMLITYVP 449