Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., TRAP dicarboxylate transporter, DctM subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  178 bits (452), Expect = 3e-49
 Identities = 126/446 (28%), Positives = 206/446 (46%), Gaps = 37/446 (8%)

Query: 2   IGIVMFFVALFALLLGFPVAFTFGGIALIFGLWA---EGIEMFAFMPYRIQSIMENTVLM 58
           + +  F + L A+ L  P+A   G    I G W          + M         +  L 
Sbjct: 6   LALTGFALMLGAIFLRVPIAVAMGLTGFI-GTWVVLGHPNATLSQMKTLTYDTFSSYSLS 64

Query: 59  AVPLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVA 118
            VPLF+ MG    K+ ++  L ++     G   GGVA++ V       A  G   A+   
Sbjct: 65  IVPLFLLMGQFATKSGMSAALFQAASDWLGHRKGGVAMAAVGACAGFGAVCGSSLATAST 124

Query: 119 MGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALWP 178
           MG ++LP M K  Y   L+ G + A GTLG +IPPS++L++   +    +  +F AAL P
Sbjct: 125 MGQVALPEMKKRGYSDSLSTGVLAAGGTLGILIPPSVILVIYAILTQQNIVKMFIAALIP 184

Query: 179 GLMLVAAYIIYILIYAKLNPQAA--MPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGS 236
           G++    Y++ + IY ++ P AA   P  P AD  R       L  + P    +VV+ G 
Sbjct: 185 GIIAALGYMLTVAIYVRVKPDAATTAPRIPMADRMR------TLWRIWP----VVVIFGL 234

Query: 237 IFAGVA--------------TPTESAALGGAGAILLALAYGQFSWSMVYDASKETVKVTA 282
           +  G+A              TPTE AA+G     +   A G  +W  + ++  ET + +A
Sbjct: 235 VMGGIAGDWNWAQDGVQALFTPTEGAAVGAVATGIYGWATGGLTWKGLLESILETAQASA 294

Query: 283 MVFAILLGATAFSMAFTYTGGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEIC 342
           M+F I+LGA  F+    +T   + + EW+          L   ++  LI G  +D + + 
Sbjct: 295 MIFFIVLGAQLFNSFLAFTQAPQQLAEWVTAQGFAPLVVLSAMLVCYLIFGCVMDSLSMI 354

Query: 343 FIIVPILAPVAVLMDVDMT------WFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVT 396
            + +PI  P+ + +D  +T      WF IL  + ++   +TPP G +LF +  +A + V 
Sbjct: 355 LLTIPIFFPIVMALDFGLTPEQAAIWFGILALIVVEVGLITPPVGMNLFIINSMA-RDVP 413

Query: 397 TMDIYRGVVPFILIQILVLISLMVFP 422
               YRGV PF+   ++ ++ L+ FP
Sbjct: 414 MGRTYRGVAPFVASDLVRVVILVAFP 439