Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 424 a.a., TRAP dicarboxylate transporter, DctM subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  220 bits (560), Expect = 7e-62
 Identities = 133/421 (31%), Positives = 232/421 (55%), Gaps = 11/421 (2%)

Query: 4   IVMFFVALFALLL-GFPVAFTFGGIALIFGLWAEGIEMFAFMPYRIQSIMENTVLMAVPL 62
           I++  VALF LLL G PVAF  GG+ L   +      + A  P  I S ++  +L+AVPL
Sbjct: 3   IILILVALFVLLLLGVPVAFALGGMGLAMLILGGFSPLMA--PQSILSTLDGFILLAVPL 60

Query: 63  FVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMGLI 122
           F+ M  +L K  +   L  ++    G   GG+A++T+L   L AA +G   A+   +G +
Sbjct: 61  FLLMSNLLLKGGVGRDLFAAVQAWVGHWPGGLAVATILSCALFAAISGSSVATAATIGTV 120

Query: 123 SLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALWPGLML 182
           ++P M+   Y+K    G + A GTLG +IPPSI +I+ G V    V  LF A + PGL+L
Sbjct: 121 AIPEMINRGYEKKFVYGLLAAGGTLGILIPPSIPMIVYGFVTEQSVIALFLAGIGPGLLL 180

Query: 183 VAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSIFAGVA 242
           V  ++++ +++A+L+     P+ P A ++ R   + A K  +P +AL  +V+  +++G  
Sbjct: 181 VTLFVLFAMLHARLS-GTYTPV-PKATMAER---MSASKRALPSVALAALVIVGLYSGAF 235

Query: 243 TPTESAALGGAGAI-LLALAYGQFSWSMVYDASKETVKVTAMVFAILLGATAFSMAFTYT 301
           TPTE+AA+G A A+ ++ L     +W   ++A +E+   TA +  I+ GA  F  A    
Sbjct: 236 TPTEAAAIGSAAALAIVTLWLRTLTWVTFWEAVRESAITTAAILLIVAGAKVFGKAIALY 295

Query: 302 GGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEICFIIVPILAPVAVLMDVDMT 361
              + +  ++  +      F++V  LV+L++G   + + +  I+ P+L P A+ +  D  
Sbjct: 296 RIPQDISAFLTQVIDGPIMFIVVVSLVLLLMGLVFEALSMILIMTPVLLPAAMGLGFDPI 355

Query: 362 WFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPFILIQILVLISLMVF 421
           WF I + + ++ + +TPP G +L+ ++ VA    T  ++ RGV PF+++ ++ +  L  F
Sbjct: 356 WFGIYMVIMVECALITPPVGLNLYVIQSVA--RTTLSNVARGVWPFLILMLVTVGVLYAF 413

Query: 422 P 422
           P
Sbjct: 414 P 414