Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., TRAP dicarboxylate transporter, DctM subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  236 bits (601), Expect = 1e-66
 Identities = 139/433 (32%), Positives = 236/433 (54%), Gaps = 25/433 (5%)

Query: 1   MIGIVMFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEMFAFMP--YRIQSIMENT--- 55
           M+G+V+  +AL       PVAF F        L A  I  + FM     ++ ++ NT   
Sbjct: 12  MLGMVIGLMALCV-----PVAFAF--------LIANLIGAYIFMGGLIGVEQLVANTGEA 58

Query: 56  ----VLMAVPLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGV 111
               VL+ VP+FV MG +   + +A +++E++ R  G   G ++  +VL GT+ AA +G 
Sbjct: 59  VSSFVLVTVPMFVLMGNLFFHSGIALKIIETLDRSMGRSTGRLSYISVLCGTIFAALSGS 118

Query: 112 VGASVVAMGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDL 171
             A+   MG + LP M + +Y + ++ G I  SG L  +IPPS + +LLG +  + + DL
Sbjct: 119 NMANTAMMGGLLLPQMEERKYQRHMSIGPIIGSGGLALLIPPSTLAVLLGSIAQISIADL 178

Query: 172 FQAALWPGLMLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIV 231
             A + PGL+L   Y+  I +  + NPQAA     D   +   E ++ +   I P++L+V
Sbjct: 179 LLAGVLPGLVLALLYVATIWLQLRRNPQAAPAY--DVVTAPFWEKIRLICTYILPMSLVV 236

Query: 232 V-VLGSIFAGVATPTESAALGGAGAILLALAYGQFSWSMVYDASKETVKVTAMVFAILLG 290
             V+G I  G+ TP+E+AA G    ++L++ YG+FSW MV  + + T++V+ MVF I++ 
Sbjct: 237 FCVVGLILLGITTPSEAAAFGVLSVLVLSILYGRFSWDMVAKSLEGTLRVSVMVFFIIIA 296

Query: 291 ATAFSMAFTYTGGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEICFIIVPILA 350
           +  FS    ++G    +  W  +        L++  +V+LILG F+D + +  + +PI  
Sbjct: 297 SKTFSQVLAFSGATSGMIAWATSYEFAPITMLLIMFVVLLILGMFVDAISMMLLTIPIFF 356

Query: 351 PVAVLMDVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPFILI 410
           P+A  M  D  WF +++ + ++ S  TPPFG  LF ++GVAP   T   I R   P+++ 
Sbjct: 357 PIAAAMGFDPIWFGLVMLLAIEMSGTTPPFGLLLFVMQGVAPPGTTYWTIVRAAAPYLIC 416

Query: 411 QILVLISLMVFPS 423
            +++L+ L+  P+
Sbjct: 417 DLILLVGLIAVPA 429