Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 434 a.a., TRAP dicarboxylate transporter, DctM subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  220 bits (560), Expect = 8e-62
 Identities = 132/430 (30%), Positives = 226/430 (52%), Gaps = 21/430 (4%)

Query: 1   MIGIVMFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEMFAFMPYRIQSIMENTV---- 56
           +I +++    L  L  G  V+ T   +  +      GI +F+  P    +IM  T+    
Sbjct: 5   IISLILIGAMLAMLAAGIWVSLTLMIVGFL------GIALFSNAP--AGAIMATTIWAQS 56

Query: 57  ----LMAVPLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVV 112
               L A+PLF++MG +L +TKLA  +   +      + G +    V    L AA +G  
Sbjct: 57  WSWALTALPLFIWMGEILFRTKLAANMFNGLVPWMNALPGRLLHVNVASCGLFAAVSGSS 116

Query: 113 GASVVAMGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLF 172
            A+   +G I++P + K  YD+ +  G++  S TLG +IPPSI+LI+ G    V +  LF
Sbjct: 117 AATTATIGRITIPELEKRDYDQNMIVGSLAGSATLGFLIPPSIILIVYGVAAEVSISRLF 176

Query: 173 QAALWPGLMLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVV 232
            A + PGLML+  ++ YI++++ ++P    P EP      R   +KA   + P L LI  
Sbjct: 177 IAGILPGLMLMVLFMGYIMLWSLMHPDRTPPAEPRIPYLER---IKATAGLFPMLGLIFA 233

Query: 233 VLGSIFAGVATPTESAALGGAGAILLALAYGQFSWSMVYDASKETVKVTAMVFAILLGAT 292
           V+GSI+AG+ATPTE+AA+G  GA+LL+   G  +W+   D+     + T M+  IL GA 
Sbjct: 234 VIGSIYAGLATPTEAAAVGVLGALLLSALSGTLNWASFRDSVAGATRTTCMITLILAGAA 293

Query: 293 AFSMAFTYTGGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEICFIIVPILAPV 352
             S+A  +TG    +  W+ +    ++  L+   L+ +++G F+D + I  +   ++ P+
Sbjct: 294 FLSVAMGFTGIPRNLAAWVGSFELSQFQLLLALTLLFVVMGCFLDGISIVVLTASVIMPM 353

Query: 353 AVLMDVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPFILIQI 412
                +D+ WF I + + ++ S +TPP G +LF L+ +    + T  + +   PF L+ +
Sbjct: 354 VQGAGIDLIWFGIYLVVVIEMSQITPPVGINLFILQSMTRHDLLT--VAKMAFPFFLVLV 411

Query: 413 LVLISLMVFP 422
           L  + L++FP
Sbjct: 412 LATLLLILFP 421