Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., TRAP C4-dicarboxylate transport system permease DctM subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  220 bits (560), Expect = 8e-62
 Identities = 139/427 (32%), Positives = 223/427 (52%), Gaps = 15/427 (3%)

Query: 4   IVMFFVALFALL-LGFPVAFTFGGIALIFGLWAEGIEMFAFMPYRIQSIMENTV------ 56
           + +   A+ AL+ LG PVA  F   A I G W     +F      I  ++ N +      
Sbjct: 7   LALLLGAIVALMALGMPVALAFLA-ANILGAW-----VFMGGERGIVQLLNNGLGALTTY 60

Query: 57  -LMAVPLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGAS 115
            L+ +PLF+ MG +   T L  ++  ++ RL G + G ++  TVL GT  +  +G    S
Sbjct: 61  ALVPIPLFLLMGEIFFHTGLGGRMFTAIDRLLGRLPGRLSYVTVLGGTGFSTLSGSSMGS 120

Query: 116 VVAMGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAA 175
              +G + +P M    Y   ++ G I  +G L  IIPPS + +LL  +  + VG L  A 
Sbjct: 121 TALLGSLMVPEMNARGYKSHMSIGPILGTGGLAIIIPPSALAVLLATLAQIDVGALLIAG 180

Query: 176 LWPGLMLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLG 235
           + PGLML   YI  I I  + +P AA P    A++S   ++   L+ V+P + ++VV++ 
Sbjct: 181 VIPGLMLAGFYIATIWIQTRRDPSAA-PAYEVAEVSLGAKLGLLLRDVVPMVGVMVVIVS 239

Query: 236 SIFAGVATPTESAALGGAGAILLALAYGQFSWSMVYDASKETVKVTAMVFAILLGATAFS 295
            +  G+ TP+E+AA G  G I+LA A+   +   +  +    +KVT M + I+ G+  FS
Sbjct: 240 LMIFGIVTPSEAAAFGALGVIILAAAFRCLTVEALRRSVVGALKVTLMAYMIVFGSATFS 299

Query: 296 MAFTYTGGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEICFIIVPILAPVAVL 355
               ++G    +  W      D    L+    V+L+LG F++ + I  + VPI  P+A  
Sbjct: 300 QLLAFSGASGGLIGWATGFDLDPIWMLLAMFGVLLVLGMFMEQISIMLLTVPIFFPLAQS 359

Query: 356 MDVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPFILIQILVL 415
           +  D+ WFA+++ + L+ SF TPPFG  LF +KGVAP S T  +IY   +PFI   +L++
Sbjct: 360 LGFDLIWFALIMLLALEISFTTPPFGLLLFVMKGVAPPSTTMREIYLAAIPFIACSLLLV 419

Query: 416 ISLMVFP 422
             L++FP
Sbjct: 420 ALLILFP 426