Pairwise Alignments

Query, 177 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 212 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), small permease component (from data) from Shewanella loihica PV-4

 Score = 46.2 bits (108), Expect = 4e-10
 Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 7   VERLFNRLSDLLGLLSSILFILLVANVVYDVVMRYAFNDVSIAFQELEWHLFATVFLLGI 66
           + R F+ + +++    + L   +   V  +V+ R+ FN   +  QEL   +     L G+
Sbjct: 2   MSRFFSHIEEVV---LNALITAMTLLVFVEVIARFFFNTGFLWIQELTLTICGWFVLFGM 58

Query: 67  PYAIKAGGHVRVDLFYERLSMKAQAVIDILGTLFFLLPFCLLVVYFGIDFAKESYALG 124
            Y +K G H+ VD F ++L  + +    IL     L+ +C + +    D+  + Y +G
Sbjct: 59  SYGVKVGAHIGVDAFVKKLPAQGRKYTAILAVAICLI-YCGMFLVGSWDYLAKMYQIG 115