Pairwise Alignments

Query, 372 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., periplasmic binding protein from Sinorhizobium meliloti 1021

 Score = 54.3 bits (129), Expect = 5e-12
 Identities = 61/273 (22%), Positives = 115/273 (42%), Gaps = 14/273 (5%)

Query: 68  AAMAEKMSNGRLQIRIDSANKHKAPLGVFDMVKSGQYDMGHSASYYWKGKVPNTLYFTSM 127
           A + E+ S GRL+I +  + +          ++ G      ++       VP  +    +
Sbjct: 44  AELVEQKSEGRLKIDVGGSAQFGDDAETITNMRLGTIAFSANSQGTTSAVVPE-IALLGL 102

Query: 128 PFGMTTGEQYAWFYHGGGMELMEKVYSPHNMLSFPGGNTDVQMGGWFQKEINSVEDLQGL 187
           PF     +Q      G   + +        ++     N  ++     +++I +  DL G+
Sbjct: 103 PFLFQDLKQAEAVMDGPVGDKIAAAAEQQGLVVLAWWNNGIRETSNSKRQITAPSDLAGM 162

Query: 188 KMRIPG--FAGEVLAELGAKPTNIAPGELYTSLERRTIDALEWVGPSLDLRMG-FHKIAP 244
           K+R P      ++   LGA PT +A  ELY +L++  +D  E   P +++     H++ P
Sbjct: 163 KIRTPPDQMTVDIFTALGASPTPMAFSELYIALQQGVVDGQE--NPLINIHSSKLHEVQP 220

Query: 245 YYYTGWHEPATELQFLVNQKTWDKLPEDLREILRVAMRTAAYDMYVQSVHESGKNWVSIT 304
           Y     H+      FL ++  +D L  + ++I+R A R A   +  Q V   G+    + 
Sbjct: 221 YISMTNHK-YESTPFLASKIVFDALLPEDQQIIRDAAREAG-QLNRQMV---GEQTTRLR 275

Query: 305 QEFPDVKVK---TFPAPVIKALREVNDRLLAKH 334
            E     VK     PAP ++A + V D+  A++
Sbjct: 276 GELEAAGVKINDVDPAPFVQATQSVYDKWRAQY 308