Pairwise Alignments

Query, 372 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 363 a.a., TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component (RefSeq) from Shewanella amazonensis SB2B

 Score =  285 bits (730), Expect = 1e-81
 Identities = 140/319 (43%), Positives = 198/319 (62%), Gaps = 2/319 (0%)

Query: 49  LAETWGPNFPIFGDTTKNMAAMAEKMSNGRLQIRIDSANKHKAPLGVFDMVKSGQYDMGH 108
           LA +W  NFP  G   ++ A M ++MS GRL+I++  A +    L VFD V  G   M H
Sbjct: 41  LATSWPKNFPGLGTAPEHFAVMVDEMSAGRLKIKVYGAGELMPALEVFDAVSQGSVQMAH 100

Query: 109 SASYYWKGKVPNTLYFTSMPFGMTTGEQYAWFYHGGGMELMEKVYSPHNMLSFPGGNTDV 168
           SASYYWKGK P   +FTS+PFG+   E   W  +GGG EL E+VY+P  +L  PGGN+ V
Sbjct: 101 SASYYWKGKAPAAQFFTSIPFGLNAQEMNGWLTYGGGQELWEEVYAPFGILPLPGGNSGV 160

Query: 169 QMGGWFQKEINSVEDLQGLKMRIPGFAGEVLAELGAKPTNIAPGELYTSLERRTIDALEW 228
           QMGGWF KEIN+++DL+GLKMR+PG  GEVL  L   P  +   ELYT+++   IDA EW
Sbjct: 161 QMGGWFNKEINTIDDLKGLKMRLPGLGGEVLKRLEGVPVTLPGRELYTAMQTGAIDATEW 220

Query: 229 VGPSLDLRMGFHKIAP-YYYTGWHEPATELQFLVNQKTWDKLPEDLREILRVAMRTAAYD 287
           VGP  DL  G HK+A  YYY GWHEP T L+F++N+  ++KLP+DL+ I+++A +    D
Sbjct: 221 VGPYNDLAFGLHKVAKYYYYPGWHEPGTTLEFMINKAAFEKLPKDLQAIVKIAAKATNQD 280

Query: 288 MYVQSVHESGKNWVSITQEFPDVKVKTFPAPVIKALREVNDRLLAKHAAEDPLAKEIQES 347
           M  +    +     ++  E   V +K FP  V+  LR V+  ++++ +++DP+ K++ E+
Sbjct: 281 MLDEYTARNVGALDALVNEH-GVVLKQFPEEVMAQLRSVSAEVISEQSSQDPMMKKVNEA 339

Query: 348 QANYLKQTRSWTDISLRAY 366
              Y    R +  IS  AY
Sbjct: 340 YREYEAGVRKYHLISEDAY 358