Pairwise Alignments

Query, 372 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., TRAP transporter, subunit DctP from Phaeobacter inhibens DSM 17395

 Score =  192 bits (488), Expect = 1e-53
 Identities = 117/340 (34%), Positives = 166/340 (48%), Gaps = 5/340 (1%)

Query: 28  AAGVALLTTSAFAEEKVYRLTLAETWGPNFPIFGDTTKNMAAMAEKMSNGRLQIRIDSAN 87
           AA    L   A+A+ K   LT+  TWG       D+ + +A     MS G L + + +A 
Sbjct: 16  AAAATTLAAPAYAQGK-RTLTMVTTWGRGLAGVHDSAQYVADAITAMSGGDLTVDVKAAG 74

Query: 88  KHKAPLGVFDMVKSGQYDMGHSASYYWKGKVPNTLYFTSMPFGMTTGEQYAWFYHGGGME 147
           +      VFD V +GQ DM H A YY+ G+ P   YFT++PFGMT  E   W+YHG G  
Sbjct: 75  ELVGAFEVFDAVTAGQADMYHGADYYFTGQHPGYAYFTAVPFGMTPQELTNWYYHGDGHA 134

Query: 148 LMEKVYSPHNMLSFPGGNTDVQMGGWFQKEINSVEDLQGLKMRIPGFAGEVLAELGAKPT 207
           L +++     + SF GGNT  Q GGW+ KEI   ED  GLK R+PG  G+ L +LGA   
Sbjct: 135 LHDELGQIFGLKSFIGGNTGPQAGGWYNKEIKGPEDFNGLKFRMPGLGGKALGKLGASVQ 194

Query: 208 NIAPGELYTSLERRTIDALEWVGPSLDLRMGFHKIAPYYYT-GWHEPATELQFLVNQKTW 266
           NI   E+Y +L    ID  EW+GP  D + GF +I   YYT G+HEP   L    N+  +
Sbjct: 195 NIPGSEVYQALSSGAIDGTEWIGPWADEKAGFQEITKTYYTAGFHEPGAALSVATNRDVF 254

Query: 267 DKLPEDLREILRVAMRTAAYDMYVQSVHESGKNWVSITQEFPDVKVKTFPAPVIKALREV 326
           + L    ++++ +A          Q ++ +G     +  +   VK   FP  V  A    
Sbjct: 255 EGLSPAHQKVIEMASAAGHQWSLAQFMNNNGAALQRL--QSGGVKTLEFPDSVWDAFGSA 312

Query: 327 NDRLLAKHAAEDPLAKEIQESQANYLKQTRSWTDISLRAY 366
               L +   ++  AK I+ S    +K +  W   S  AY
Sbjct: 313 TKETLDEFMGDELFAK-IRGSVEESMKASSGWITKSEGAY 351