Pairwise Alignments

Query, 372 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., TRAP dicarboxylate family transporter (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 67.4 bits (163), Expect = 5e-16
 Identities = 82/341 (24%), Positives = 140/341 (41%), Gaps = 25/341 (7%)

Query: 20  MKRSVLLIAAGVALLTTSAFAEEKVYRLTLAETWGPNFPIFGDTTKNMAAMAEKMSNGRL 79
           MKR V+L+A  +   + +  A E      L+   GP FP +G   +  A +  + + GR+
Sbjct: 1   MKRFVVLLALCLVFTSLTVNAAEYKPEYRLSTVLGPAFP-WGRAAERWANLVRENTEGRI 59

Query: 80  QIRIDSANKHKA--PLGVFDMVKSGQYDMGHSASYYWKGKVPNTLYFTSMPFGMTTGEQY 137
            I++              F  ++ G  DM   +S  W  +V     F S+PF M   + +
Sbjct: 60  NIKVYPGTSLVGGDQTKEFTAIRQGVIDMAVGSSINWSPQVKQLNLF-SLPFLMPDEKAF 118

Query: 138 AWFYHGGGMELMEKVYSPHNMLSFPGGNTDVQMGGWFQKEINSVEDLQGLKMRIPGFAGE 197
                G     +  +     ++    G    +     +  + S  DL+GLK+R+ G    
Sbjct: 119 DALTTGPVAADIFAILDKQGVVPLAIGENGFRELSNSKVNVTSPADLKGLKIRVVGSPIF 178

Query: 198 V--LAELGAKPTNIAPGELYTSLERRTIDALEWVGP-SLDLRMGFHKIAPYYYTGWHEPA 254
           +     LGA PT ++  +   +L  + +D  E   P S+      H +   Y T W   A
Sbjct: 179 IDGFTALGANPTQMSWADAQPALATKAVDGQE--NPLSVFNAAKLHTVEQKYLTLWGYMA 236

Query: 255 TELQFLVNQKTWDKLPEDLREILRVAMRTAAYDMYVQS-----------VHESGKNWVSI 303
             L ++V++K W++  E  R I+  A +  A +  + +           + E  KN V++
Sbjct: 237 DPLFYVVSKKVWEEWSEADRAIVAEAAKQTAAENLIDARKGITPEDDSLLKEIEKNGVTV 296

Query: 304 TQEFPDVKVKTF---PAPVIKALREVNDRLLAKHAAEDPLA 341
           T+   D + K F     PV     EV  + L K  AED +A
Sbjct: 297 TR-LTDEQRKPFQKATRPVFDKWAEVVGKDLVK-KAEDAIA 335