Pairwise Alignments

Query, 372 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., TRAP dicarboxylate transporter- DctP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  269 bits (688), Expect = 8e-77
 Identities = 132/319 (41%), Positives = 194/319 (60%), Gaps = 2/319 (0%)

Query: 49  LAETWGPNFPIFGDTTKNMAAMAEKMSNGRLQIRIDSANKHKAPLGVFDMVKSGQYDMGH 108
           LA +W  NF   G   +  A +  +MS+GRLQI +  A +      VFD V  G+  M H
Sbjct: 47  LATSWPKNFAGLGMAPERFAKLVNEMSHGRLQIHVYGAGELMPAFAVFDGVSQGKIQMAH 106

Query: 109 SASYYWKGKVPNTLYFTSMPFGMTTGEQYAWFYHGGGMELMEKVYSPHNMLSFPGGNTDV 168
           +ASYYWKGK P + +F+S+PFGMT  E   W ++GGGM L E+VY P  ++   GGNT +
Sbjct: 107 AASYYWKGKAPASQFFSSIPFGMTAQEMNGWLHYGGGMALWEEVYRPFGIIPLAGGNTGM 166

Query: 169 QMGGWFQKEINSVEDLQGLKMRIPGFAGEVLAELGAKPTNIAPGELYTSLERRTIDALEW 228
           QMGGWF K INS+ D +GLK+R+PG  GEVL  +GA P N+A  ELY +L+  +IDA EW
Sbjct: 167 QMGGWFNKPINSIADFKGLKIRMPGLGGEVLKRVGAVPVNMAGRELYGALQTGSIDAAEW 226

Query: 229 VGPSLDLRMGFHKIAP-YYYTGWHEPATELQFLVNQKTWDKLPEDLREILRVAMRTAAYD 287
           VGP  DL  G HK+A  YYY GWHEP + ++FL+N+  ++ LP+DL+ I++ A R    D
Sbjct: 227 VGPVNDLAFGLHKVAKYYYYPGWHEPGSNMEFLINKGAFESLPQDLQAIVKTAARAINQD 286

Query: 288 MYVQSVHESGKNWVSITQEFPDVKVKTFPAPVIKALREVNDRLLAKHAAEDPLAKEIQES 347
           M  +    +     ++ ++   V +K FP  V+  L  ++ +++ + A +DP+ +++  +
Sbjct: 287 MLDEYTTRNVTALDTLVKD-EGVVLKAFPPQVLTELERISQQVIEEQAEQDPMMRKVYRA 345

Query: 348 QANYLKQTRSWTDISLRAY 366
              Y +  R +  IS  AY
Sbjct: 346 YHAYEQGGREYHKISEDAY 364