Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 508 a.a., cell wall degradation protein from Pseudomonas fluorescens FW300-N2E2

 Score =  175 bits (444), Expect = 3e-48
 Identities = 147/490 (30%), Positives = 228/490 (46%), Gaps = 62/490 (12%)

Query: 47  VEQIYHSNNDQLLWSDLATANHFEAQLEVIHRASFSPLFSRQLFALKSYRQQDRWHEYDV 106
           ++  Y  N  Q +WSD       + QL+ +      P  +R    ++   Q    H  D+
Sbjct: 44  LQAFYQQNAGQEVWSDDERRGALQVQLQQLADDGLDP--ARYGLPVEGATQGP--HCADI 99

Query: 107 LATDTLLQYLSYAEQAPKVGIAWFFEGQLD---QPLAPPSEEAQLALHMA-IGNQSLARL 162
             +   LQ L        +   +  + +L+   +   PP +   + L +A +G ++LA  
Sbjct: 100 AISRRYLQALH------DLRFGYLPQDRLEPVWKANPPPQDHPAVVLAIAGLGLRNLADA 153

Query: 163 MDEYTPQDPAYQQLLQAYQSLSSIEFNEVALYEQMERLKRPGDPLSHRE-------ALVQ 215
            ++  P    Y+ L   Y  L       +A ++ +     PG PL   +       AL Q
Sbjct: 154 FEQARPNLDLYRNLRGLYARLRQ---QPLAEWQAV-----PGGPLLQPDKQDARVPALAQ 205

Query: 216 RLALVN-LDTTSILNDVAYYDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLA 274
           RL     L T   L+D  +Y   L + +K FQ  H LQ DGV+GP T+  LN S   R  
Sbjct: 206 RLFNEGYLSTPPQLSD-EHYSPMLVEAMKSFQAQHSLQADGVVGPWTVTELNISPAMRRE 264

Query: 275 LLALNAERIRLWPTQ--QDSMIVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTK 332
            L +N ER+R W  Q  +   ++VNV    +  +  G  V++++  VG+  R TP++ + 
Sbjct: 265 QLRINLERMR-WLAQDVEADSVLVNVAAAQLTVYQGGAPVWQTRTQVGRAQRQTPLLKSH 323

Query: 333 LDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVE 392
           +  L +NPTW +P  IM ED LP ++RD E+L+ H++ I+ G   P + +   IDWE   
Sbjct: 324 VTRLTLNPTWTIPPTIMREDKLPEIRRDPEFLSRHNLRILDGDGLPLLAED--IDWE--H 379

Query: 393 PETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAE 452
           P      LRQ  G +N LG      PN  ++YLHDTPS+ LF+   RAFSSGC+R+E   
Sbjct: 380 PGNL--MLRQDPGPKNPLGKMAIRFPNPFSVYLHDTPSQALFSKGPRAFSSGCVRIEQVM 437

Query: 453 KF------------AQTLLANQGITLDDFPVSTQAIALKKRIPVHIIYQTVWYE-EGVLH 499
           +              +TLLA++         ST    L + +P+ + Y T   + +G   
Sbjct: 438 RLRDLLVSPAERARTETLLASE---------STHEFRLARPVPILLGYWTAQADSQGQAV 488

Query: 500 YRDDIYHYDA 509
           Y  DIY  DA
Sbjct: 489 YVPDIYGRDA 498