Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 523 a.a., peptidoglycan-binding protein from Pseudomonas fluorescens FW300-N2E3

 Score =  165 bits (418), Expect = 3e-45
 Identities = 106/282 (37%), Positives = 149/282 (52%), Gaps = 13/282 (4%)

Query: 234 YDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQ--QD 291
           Y+  L   +K FQ  H LQ DGV+G  T+  LN S   R   L +N ER R W  Q  + 
Sbjct: 239 YNKELVSALKSFQLSHSLQADGVLGEGTLTELNVSPALRREQLRVNLERFR-WLAQDLEP 297

Query: 292 SMIVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 351
           + ++VNV    +  +  G  V++++  VG+  R TP++ + +  L +NPTW VP  IM E
Sbjct: 298 NGLLVNVAAATLTVYQGGTPVWQTRTQVGRAERQTPLLKSSVTRLTLNPTWTVPPTIMRE 357

Query: 352 DILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALG 411
           D LP ++RD  +L   +++++     P  +D   IDW+   P      LRQ AG +N LG
Sbjct: 358 DKLPEIRRDQAFLGKQNLQVLDSDGHPLAVDE--IDWD--NPGNI--LLRQDAGPKNPLG 411

Query: 412 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLL--ANQGITLDDF 469
                 PN  A+YLHDTPS+ LF  A RAFSSGC+RVE A +    LL  A +  T +  
Sbjct: 412 QMAIRFPNPFAVYLHDTPSQALFQKAPRAFSSGCVRVEQAMQLRDLLLSPAERQRTNELL 471

Query: 470 PVS-TQAIALKKRIPVHIIYQTVWYE-EGVLHYRDDIYHYDA 509
               T    L   +P+ + Y TV  + +G L Y  DIY  DA
Sbjct: 472 ATGLTHEFRLATPVPILLSYWTVQADRQGQLLYAPDIYGRDA 513