Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 530 a.a., Uncharacterized protein conserved in bacteria from Pseudomonas stutzeri RCH2

 Score =  172 bits (435), Expect = 4e-47
 Identities = 123/382 (32%), Positives = 182/382 (47%), Gaps = 21/382 (5%)

Query: 139 LAPPSEEAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFNEVALYEQME 198
           L  P +   L      G   L    +   P+   Y+ L  AY +      N +  +  M 
Sbjct: 153 LPEPDDTGPLVQIAVQGLSDLPSAFERARPEHALYRDLRAAYAAARQ---NSLPAWRPMP 209

Query: 199 R--LKRPGDPLSHREALVQRLALVNLDTTSILNDVAYYDASLEKPIKQFQKMHGLQTDGV 256
                RPG     R  L++ L L    +T  +     YD  L + +K FQ  HGL+ DG+
Sbjct: 210 AGPTLRPGMS-DARVPLLRELLLAGAGSTPAME--LRYDDELVEAVKGFQLQHGLEDDGI 266

Query: 257 IGPQTMKWLNTSVTERLALLALNAERIRLWPTQ--QDSMIVVNVPGFDMKYWDAGREVFE 314
           +G  T+  LN S   RL  L +N ER+R W T+  +   ++V++ G  + Y+      ++
Sbjct: 267 VGAATLAALNVSPASRLDQLRINLERLR-WITRDLEPQSLLVDIAGARLIYFRDSCPFWQ 325

Query: 315 SKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRG 374
           ++  VG+  R TP + +++  L +NPTW VP  I+ +D LP++++D  YLA H M ++  
Sbjct: 326 TRTQVGREARQTPPLKSRVTRLTLNPTWTVPPTILRQDKLPLIRQDVGYLARHQMRVLDA 385

Query: 375 WSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLF 434
             +   +DP  +DW           LRQ AG  N LG       N  ++YLHDTPS+ LF
Sbjct: 386 QGNS--LDPHSVDWN----NPHGILLRQDAGPDNPLGQVAIRFANPFSVYLHDTPSQPLF 439

Query: 435 NNASRAFSSGCIRVENAEKFAQTLL---ANQGITLDDFPVSTQAIALKKRIPVHIIYQTV 491
             ASRAFSSGC+RVE A + A  LL     + +        T    L +  P+ + Y T 
Sbjct: 440 GRASRAFSSGCVRVEAAMQLADLLLEPGERETVATLLQTGKTHEYRLARPTPILMAYWTA 499

Query: 492 WYEE-GVLHYRDDIYHYDALAL 512
             +E G   YR DIY  DA  L
Sbjct: 500 DTDENGRPVYRPDIYKRDAALL 521