Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  143 bits (361), Expect = 2e-38
 Identities = 103/374 (27%), Positives = 178/374 (47%), Gaps = 34/374 (9%)

Query: 156 NQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFNEVALYEQME----RLKRPGDP---LS 208
           +  +A L++   P+   +  L Q  + L +    +V    ++E     L +PG+    L+
Sbjct: 253 SSDVAALVESQNPKSAQFTALRQELERLRT----QVEAAPRVEIAPGTLLKPGESNPELA 308

Query: 209 HREALVQRLALVNLDTTSILNDVAY-----YDASLEKPIKQFQKMHGLQTDGVIGPQTMK 263
           +  A ++  A   L T   +   AY     Y   L   ++ FQK +GL+ DG++G  +++
Sbjct: 309 NVIAGIKLKASEALKTEHAVVLAAYEGTPDYTPELVPLVEAFQKEYGLKADGIVGQASIR 368

Query: 264 WLNTSVTE--RLALLALNAERIRLWPTQQ-DSMIVVNVPGFDMKYWDAGREVFESKVVVG 320
            L    T   ++  + +  E+ R  P    D  + +N P F   Y + G E F  +VVVG
Sbjct: 369 ALTGGDTTQGKIDKVEIAMEQARWLPDGLGDRYVFINQPAFTASYTEQGTEQFSMRVVVG 428

Query: 321 KTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDPEV 380
                T     ++ ++ +NP W VP  I+V ++LP ++ D  YL     ++  G     V
Sbjct: 429 SKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRNDPGYLDRMGYQVEVGG---RV 485

Query: 381 IDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNASRA 440
           +    ++W      T    +RQ     NALG  K   PN+ AIY+HDTPSK  F    RA
Sbjct: 486 VPSTAVNWYG---STNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFKRDQRA 542

Query: 441 FSSGCIRVENAEKFAQTLLANQGITLDDFPVS-----TQAIALKKRIPVHIIYQTVW-YE 494
            S GC+R+ +  + A  +L   G+++D+  +       +A+ +  ++PV++ Y T W  +
Sbjct: 543 LSHGCVRLADPRRMAAAVL---GVSVDEVGMEISGGRNKALPVSAKVPVYVSYFTAWPNK 599

Query: 495 EGVLHYRDDIYHYD 508
           +G + Y DD+Y  D
Sbjct: 600 DGTVEYFDDVYERD 613