Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., peptidoglycan binding domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  201 bits (512), Expect = 4e-56
 Identities = 117/317 (36%), Positives = 180/317 (56%), Gaps = 16/317 (5%)

Query: 200 LKRPGDPLSHREALVQRLALVNLDTTSILNDVAYYDASLEKPIKQFQKMHGLQTDGVIGP 259
           L RPGD  +   A+ +RL L+    T     ++ YD  + + +K FQ  HGL+ D VIGP
Sbjct: 149 LLRPGDSHTEVVAIAKRLWLLGDMETEPGYALSRYDDEVAQGVKAFQHRHGLKQDAVIGP 208

Query: 260 QTMKWLNTSVTERLALLALN-AERIRLWPTQQDSMIVVNVPGFDMKYWDAGREVFESKVV 318
           +T+ WLN +   R A LA +   + R   T   + ++VN+P FD++  D G  +  S+V+
Sbjct: 209 KTLYWLNLAPDTRAARLARDYLLQSRERQTLPSTYVLVNIPAFDLELVDDGEALMHSRVI 268

Query: 319 VGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWS-D 377
           VGK +R TP + +++ ++++NP+W VP ++M  D+LP V++D  YL+     +   WS +
Sbjct: 269 VGKPSRKTPFIQSEISAVVVNPSWRVPRRLMRLDVLPKVRKDGSYLSRKGFIV---WSRE 325

Query: 378 PEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNA 437
            E +      +++     FPY L Q+ G  NALG +K +  N   +YLHDTP KHLF+  
Sbjct: 326 GEEVKETDDFFQSAAAGKFPYLLEQRPGPDNALGRFKLHFANEDNVYLHDTPDKHLFDEP 385

Query: 438 SRAFSSGCIRVENAEKFAQTLLANQGI--------TLDDFPVSTQAIALKKRIPVHIIYQ 489
            RA SSGC+RVE   + +   LAN  +        TL   P +T+   LK+R+PVH +Y 
Sbjct: 386 MRALSSGCVRVEKINELS-AWLANGRLADPRRWQQTLQT-PQTTRWFTLKERLPVHFVYW 443

Query: 490 TVWYE-EGVLHYRDDIY 505
           T W + EG   +R+DIY
Sbjct: 444 TSWVDAEGKAQFREDIY 460