Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 527 a.a., L,D-transpeptidase family protein from Pseudomonas fluorescens SBW25-INTG

 Score =  166 bits (421), Expect = 2e-45
 Identities = 122/382 (31%), Positives = 187/382 (48%), Gaps = 22/382 (5%)

Query: 141 PPSEE--AQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFNEVALYEQME 198
           PP+ +   ++    A G Q +A+  D+  P    Y+ L  AY   +++    +  ++ + 
Sbjct: 151 PPTRDPNTEVLAFAAAGLQDMAQAFDQARPSADLYRSLRNAY---ATVRQQPLPHWDPVG 207

Query: 199 R--LKRPGDPLSHREALVQRLALVNLDTTSILNDVAYYDASLEKPIKQFQKMHGLQTDGV 256
              L RPG        L +RL       T+  +    Y   L K +K FQ  H LQ DGV
Sbjct: 208 SGPLLRPGMEDPRVPELARRLISGGYLATA--SSGKQYHDELVKAVKAFQLSHSLQADGV 265

Query: 257 IGPQTMKWLNTSVTERLALLALNAERIRLWPTQ--QDSMIVVNVPGFDMKYWDAGREVFE 314
           IG  T+  LN S   R   L +N ER R W  Q  +   ++VNV    +  + +G  V++
Sbjct: 266 IGAGTVAELNISPAIRREQLRINLERFR-WLAQDLEPEGVLVNVAAAQLSVYQSGIPVWQ 324

Query: 315 SKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRG 374
           +++ VG+  R TP++ +++  L +NPTW +P  IM ED LP ++ + EYL   +++++  
Sbjct: 325 TRLQVGRAERQTPLLKSRITRLTLNPTWTIPPTIMREDKLPAIRLNPEYLRQQNLQVLDA 384

Query: 375 WSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLF 434
              P  + P  IDW    P      LRQ+AG +N LG      PN  ++YLHDTPS+ LF
Sbjct: 385 EGHP--LAPEQIDW--ARPGNI--LLRQEAGPRNPLGKIVMRFPNPYSVYLHDTPSQPLF 438

Query: 435 NNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS---TQAIALKKRIPVHIIYQTV 491
               RAFSSGC+RVE        L++       D  ++   T    L   +PV + Y TV
Sbjct: 439 TKGPRAFSSGCVRVEQPLLLRDLLVSPAERARTDELLATGVTHEFRLATPVPVLLGYWTV 498

Query: 492 WYE-EGVLHYRDDIYHYDALAL 512
             + +G L Y  DIY  D + +
Sbjct: 499 EVDRQGGLVYAPDIYARDLVLM 520