Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., putative L,D-transpeptidase from Phaeobacter inhibens DSM 17395

 Score =  172 bits (435), Expect = 4e-47
 Identities = 123/387 (31%), Positives = 185/387 (47%), Gaps = 18/387 (4%)

Query: 134 QLDQPLAPPSEEAQLALHMA-IGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFNEVA 192
           Q+D  +     +   A ++A I +Q+    +    PQ   YQ LL+    L +++     
Sbjct: 147 QIDDGIVRKKHQPDFAAYLAGIRDQAPVAYLRSLAPQSAQYQALLREKMRLEALQRAGGW 206

Query: 193 LYEQMERLKRPGDPLSHREALVQRLALVNLDTTSILNDVAYYDASLEKPIKQFQKMHGLQ 252
             +   +    GD      AL  RL  +     S       YD +LE+ ++ FQ  HGL 
Sbjct: 207 GPQVAAKKLESGDSGPAVIALRNRLIAMGYLPRSAARR---YDGALERAVQAFQSDHGLT 263

Query: 253 TDGVIGPQTMKWLNTSVTERLALLALNAERIR-LWPTQQDSMIVVNVPGFDMKYWDAGRE 311
            DGV G  T+  +N  V+ RL  + +  ER R L P +    ++VN   F  K  D G  
Sbjct: 264 ADGVAGGGTLAEINKPVSARLKSVLVAMERERWLTPERGTRHVLVNQTDFTAKIIDNGEV 323

Query: 312 VFESKVVVGKTT--RPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHM 369
            F ++ V+GK    R +P  + +++ ++INP+W VP  I+ ++ LP ++ +   + +  +
Sbjct: 324 TFVTRSVIGKDNADRRSPEFSDEMEHMVINPSWYVPRSIVTKEYLPKLRNNPNAVGHIEI 383

Query: 370 EIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTP 429
              RG      ++ A  D+      TFP+ +RQ    +NALG  KF  PN   IYLHDTP
Sbjct: 384 TDSRG----RKVNRATADFSKYTARTFPFAMRQPPSRKNALGLVKFMFPNKYNIYLHDTP 439

Query: 430 SKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDF------PVSTQAIALKKRIP 483
            K LF    RAFS GCIR+    +FA  LLA Q     DF            + L +++P
Sbjct: 440 QKSLFQREVRAFSHGCIRLAQPFEFAYALLARQTENPKDFFHRILNSGKETKVVLDQKVP 499

Query: 484 VHIIYQTVWY-EEGVLHYRDDIYHYDA 509
           VHIIY+T +   +G   YR DIY  DA
Sbjct: 500 VHIIYRTAFVTPKGQPEYRRDIYGRDA 526