Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., peptidoglycan binding domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  199 bits (506), Expect = 2e-55
 Identities = 118/352 (33%), Positives = 187/352 (53%), Gaps = 23/352 (6%)

Query: 168 PQDPAYQQLLQAYQSLSSIEFNEVALYEQMERLKRPGDPLSHREALVQRLALVNL----- 222
           PQ   Y  L    + L  +  +E  L  + +   +PGD  SHR     R+ L  L     
Sbjct: 102 PQVADYLMLSNRVRYLLWLARHESWLPLEPQGWLKPGD--SHRIIPEIRVRLQALGDYPQ 159

Query: 223 -DTTSILNDVAYYDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALN-A 280
            DT+ +     Y+D +L+  + +FQ  HGL+ D +IGP T+ WLN +  ER  LLA+N  
Sbjct: 160 GDTSGL-----YFDETLKAAMIKFQTRHGLKPDAIIGPATLSWLNRTPRERAQLLAVNFI 214

Query: 281 ERIRLWPTQQDSMIVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDSLIINP 340
            R        +  +++N+P ++M   D  +    SKV+VGK  R TP+++ ++ +L++NP
Sbjct: 215 RRAEYLADIGERYLLINIPAYEMWLVDDNQVALRSKVIVGKPYRQTPIISGEIKNLVLNP 274

Query: 341 TWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRL 400
           +W VP +++  D+LP V+ D  Y+++ + E+       E +  +  +W  +    FPYRL
Sbjct: 275 SWRVPRRLLTHDLLPKVREDGSYISSRNFEVFD--YQGERVIKSDDEWRDIAKGKFPYRL 332

Query: 401 RQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLA 460
            Q+ GV N LG YKF  PN  ++YLHDT  K LF  + RA SSGCIR+E  E+ A  + +
Sbjct: 333 VQKPGVGNTLGRYKFFFPNEYSVYLHDTSDKALFQRSDRALSSGCIRIEKVEQLANWMAS 392

Query: 461 N------QGITLDDFPVSTQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIY 505
           +        + +      TQ  A    +P+H++Y T W  ++ V  +RDDIY
Sbjct: 393 HLVRDKQTWVRMQIERDKTQWFAFDAGLPIHLVYWTSWLDDDNVAQFRDDIY 444