Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 603 a.a., L,D-transpeptidase from Pantoea sp. MT58

 Score =  273 bits (698), Expect = 1e-77
 Identities = 189/588 (32%), Positives = 283/588 (48%), Gaps = 79/588 (13%)

Query: 5   RVVAAIALLFFVIPCSATQRFV----------ELGWIDSTSPVNEQITNP------ALVE 48
           RVV+ +AL   V+P +  Q  V           +   DS   + +  ++         + 
Sbjct: 11  RVVSLLALALSVVPFTLPQAAVIAALPGTSQAAISVSDSQQRIRQAFSSADQPFYLGPLA 70

Query: 49  QIYHSNNDQLLWSDLATANHFEAQLEVIHRASFSPLFSRQLFALKSYRQQDRWHEYDVLA 108
            +Y S + Q LW D      F+ QL  +  +   P F+R +  L +          DV  
Sbjct: 71  TLYASRHMQPLWQDPQAVQKFQQQLAEVALSGVQPQFTRWIERLTN--PAITGFARDVAL 128

Query: 109 TDTLLQYLSYAEQAPKVGIAWFFEG---QLDQPLAPPSEEAQLALHMAIGNQSLARLMDE 165
           +D +L YL +    P  G  W +     +L QP      + Q A++    N  +A L  +
Sbjct: 129 SDAMLGYLQFVSNVPTQGETWLYSNVPYRLTQPSVAVVNQWQNAVNAGSDNAFIASLQPQ 188

Query: 166 YTPQDPAYQQLL------QAYQSLSSIEF--------NEVALYEQMER---------LKR 202
           +    P +  L+      Q +  L S E         +  AL E ++R            
Sbjct: 189 HPQYQPMHAALITLLSDKQPWPQLKSSETLRPGQVSDDVPALREILQRSGMLTAQVNAPA 248

Query: 203 PGD--------PLSHREALV----QRLALVNLDTTSIL------------NDVAYYDASL 238
           P D        P++H +  V        + NL T S              N    YD +L
Sbjct: 249 PNDDAVPVAASPVTHSDQPVAVSPSAAPVSNLLTPSPQSPGNVQSQTLEGNTANIYDETL 308

Query: 239 EKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSMIVVNV 298
              +K+FQ+  GL  DG IG +T +WLN S   R +LLALN +R+RL P    + I+VN+
Sbjct: 309 VAAVKRFQQWQGLDGDGAIGARTRQWLNVSPQMRASLLALNIQRLRLLPDDMHNGIMVNI 368

Query: 299 PGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVK 358
             + + Y++ G ++  S+V+VG+  R TP+M + L+++++NP WNVP  ++ +DI+P VK
Sbjct: 369 ANYSLIYYNKGNKILSSRVIVGRPDRKTPLMRSALNNVVLNPPWNVPTTLVRKDIIPKVK 428

Query: 359 RDSEYLANHHMEIIRGWS-DPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNT 417
            D  YL  H   ++ GWS D EVIDP++IDW  V   +FPYRL Q  G  NALG YKFN 
Sbjct: 429 LDPTYLYKHGYTLLSGWSADAEVIDPSMIDWRMVTASSFPYRLIQAPGEANALGRYKFNM 488

Query: 418 PNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS----- 472
           P+S AIYLHDTP+ +LF    RA SSGC+RV  A + A  LL + G   +D  +S     
Sbjct: 489 PSSDAIYLHDTPNHNLFQRDIRALSSGCVRVNKASELAGLLLQDAG--WNDARISSTLKE 546

Query: 473 --TQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALGNGDA 517
             T+ + ++ RIPV++ Y T W  ++G   +R DIY+YD  A     A
Sbjct: 547 GDTRYVPIRHRIPVNLYYLTAWVADDGKPQFRTDIYNYDDTARSGSQA 594