Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 502 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  206 bits (525), Expect = 1e-57
 Identities = 113/289 (39%), Positives = 167/289 (57%), Gaps = 10/289 (3%)

Query: 229 NDVAYYDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPT 288
           N+   Y   L   IK FQ+ HGL  DGVIG QT+ WLN S   R  LLA N  R  ++  
Sbjct: 202 NNGMLYGDELVTAIKLFQQQHGLLADGVIGKQTLFWLNQSPRARAKLLARNVLRQSIFTA 261

Query: 289 QQDSM-IVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHK 347
           Q  +  ++VN+P F++K  + G+    SKV+VGK +RPTP++ +++ S+++NP W VP  
Sbjct: 262 QLPARYLLVNIPAFELKLIEDGQVALRSKVIVGKASRPTPLLASQISSVVMNPEWRVPRT 321

Query: 348 IMVEDILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQ 407
           I+  DILP +++D  YL     ++     D +  + +  +W+A+    FPY+L Q+ G +
Sbjct: 322 IIKRDILPHIRQDGHYLTEREFDVYA--YDGQQAEHSADEWQALASSHFPYQLVQRPGPK 379

Query: 408 NALGTYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFA---QTLLANQGI 464
           NALG YKF+  NS ++YLH T    LF   +RA SSGCIRVE  E+ A   +T L     
Sbjct: 380 NALGRYKFHFDNSFSVYLHGTSEPSLFKRTNRALSSGCIRVEKVEELALWFKTHLVKDQR 439

Query: 465 TLDDFPVST---QAIALKKRIPVHIIYQTVWYEE-GVLHYRDDIYHYDA 509
             D     T   Q  AL  ++PV ++Y TVW ++ G + YR+DIY  ++
Sbjct: 440 LWDKLHTDTTQSQWFALSDKLPVFVVYWTVWLDDAGQVQYRNDIYQQES 488