Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 571 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  192 bits (487), Expect = 4e-53
 Identities = 148/511 (28%), Positives = 238/511 (46%), Gaps = 53/511 (10%)

Query: 38  NEQITNPALVEQIYHSNNDQLLWSDLATANHFEAQLEVIHRASFSPLFSR-----QLFAL 92
           N QI +  L+ ++Y   + Q LW D   A      L+VI RA    L        +L  L
Sbjct: 56  NTQIISAKLLSRVYQVRHYQALWEDKDYAG---TMLDVIKRADEEGLAKEDYHYPKLVEL 112

Query: 93  KSYRQQDRWHE------YDVLATDTLLQY----LSYAEQAPKVGIAWFF-EGQLDQPLAP 141
                   W +      ++VL +D ++ Y    L+       +G  W + E  LD     
Sbjct: 113 YQQLSASNWQDEYKSSIFEVLLSDGIITYAIHLLNGKVNPSMLGKTWNYDEAHLDFDTTL 172

Query: 142 PSEEAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQA---YQSLSS-IEFNEVALYEQM 197
              E  +  H      ++A  ++   P+   Y QL Q    Y+ L++   F  +   E +
Sbjct: 173 KQLEEHIKAH------TVAEAINGLAPKITPYHQLKQYLAHYKDLAARYPFTTIPYTEVI 226

Query: 198 ERLKRPGDPLSHREALVQRL---------ALVNLDTTSILNDVAYYDASLEKPIKQFQKM 248
               +PG      + +  RL         A V  D T + N    YD  LE  I+QFQ  
Sbjct: 227 ----KPGTTSPSIKGIAARLKEQGYLDANATVQ-DATLVANAPLLYDNILEAAIRQFQAD 281

Query: 249 HGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIR-LWPTQQDSMIVVNVPGFDMKYWD 307
           H L+ DGVIG  TM  LN    +R+  + +N ER R L      + ++VN+ G+++  + 
Sbjct: 282 HSLKADGVIGAGTMAALNVPYAQRVEQIRINLERARWLSANLSANYLIVNLAGYELLLFK 341

Query: 308 AGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANH 367
                + + +++GK    TP+  +KL  +++NPTW VP+ I  E I+   ++D +YL   
Sbjct: 342 DNNLSWRTDIIIGKIDSKTPLFKSKLKYVVVNPTWTVPNSISTE-IINHQRKDPDYLHKK 400

Query: 368 HMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHD 427
           H +++     P  +D + IDW ++  + FPY   Q+ G  N+LG  KF  PN  +IYLHD
Sbjct: 401 HFKVVESSGTP--VDASGIDWHSMTRKNFPYWFVQEPGADNSLGLVKFIFPNQYSIYLHD 458

Query: 428 TPSKHLFNNASRAFSSGCIRVENAEKFAQTLL-ANQGITLDDF-----PVSTQAIALKKR 481
           TPSK+LF+   RAFS GCIRV++    A  LL AN   + +          T+ + L + 
Sbjct: 459 TPSKNLFDKTDRAFSHGCIRVKDPLVLADKLLSANANWSSETLNNKLAEGKTENLFLDEP 518

Query: 482 IPVHIIYQTVWYEEGVLHYRDDIYHYDALAL 512
           + + I+Y T   + G + + +D+Y  D + +
Sbjct: 519 LDILIMYWTATIKNGKIKFYNDVYTRDPVLI 549