Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 607 a.a., putative L,D-transpeptidase YcbB from Enterobacter sp. TBS_079

 Score =  272 bits (696), Expect = 2e-77
 Identities = 170/515 (33%), Positives = 258/515 (50%), Gaps = 51/515 (9%)

Query: 50  IYHSNNDQLLWSDLATANHFEAQLEVIHRASFSPLFSR--QLFALKSYRQQDRWHEYDVL 107
           +Y + + + +W +      F+ QL  +  A F P F++  +L    +   Q R    DV+
Sbjct: 102 LYAARDMKPMWENRDAVRAFQQQLAEVAIAGFQPQFTKWVELLTDPAVTGQAR----DVV 157

Query: 108 ATDTLLQYLSYAEQAPKVGIAWFFEGQLDQP--LAPPSEEAQLALHMAIGNQSLARLMDE 165
            +D ++ YL +    P  G  W +    D+P  LA P+        +A+ +  L R +  
Sbjct: 158 LSDAMMGYLQFVAGIPVNGNRWLYS---DKPYKLATPALSVINQWQLALDSGDLPRFIAS 214

Query: 166 YTPQDPAYQQLLQAYQSL------------------SSIEFNEVALYEQMER-------- 199
             P  P Y  + Q+   L                       +  AL E ++R        
Sbjct: 215 LAPAHPQYATMHQSLLELVGDSRPWPQMRGTATLRPGQWSSDVPALREILKRSGILDSGP 274

Query: 200 -LKRPGDPLSHREALVQRLALVNLDTTSILNDV-AYYDASLEKPIKQFQKMHGLQTDGVI 257
            +  PGD    +  +V   A V     ++L+D  A YD  L   +KQFQ   GL  DGVI
Sbjct: 275 KIALPGDDA--QSVVVSPSAPVKEKKAAVLSDKPAAYDRELVAAVKQFQAAQGLGADGVI 332

Query: 258 GPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSMIVVNVPGFDMKYWDAGREVFESKV 317
           G  T  WLN S  +R  +LALN +R+RL P    + I+VN+P + + Y+  G EV  S+V
Sbjct: 333 GQSTRDWLNVSPAQRAGVLALNIQRLRLLPGTLSTGIMVNIPAYSLVYYQNGSEVLASRV 392

Query: 318 VVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSD 377
           +VG+  R TP+M++ L+++++NP WNVP  +  +DILP V  D  YL  H   ++RGW+ 
Sbjct: 393 IVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNS 452

Query: 378 PEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNA 437
            E IDP ++DW  +     P+R +Q  G  N+LG YKFN P+S AIYLHDTP+ +LF   
Sbjct: 453 KEAIDPYMVDWSTITASNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHNLFQKD 512

Query: 438 SRAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS-------TQAIALKKRIPVHIIYQT 490
           +RA SSGC+RV  A + A  LL + G   +D  +S       T+ + ++  IPV++ Y T
Sbjct: 513 TRALSSGCVRVNKASELANMLLQDAG--WNDTRISDALKQGDTRYVNIRHNIPVNLYYLT 570

Query: 491 VWY-EEGVLHYRDDIYHYDALALGNGDASPNLTKI 524
            +  E+G   YR DIY+YD  A       P   ++
Sbjct: 571 AFVGEDGRTQYRTDIYNYDLTARSGAQILPKAEQL 605