Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 558 a.a., peptidoglycan binding domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  218 bits (555), Expect = 5e-61
 Identities = 117/288 (40%), Positives = 171/288 (59%), Gaps = 10/288 (3%)

Query: 229 NDVAYYDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWP- 287
           N+   YD  L + IK FQ  HGLQ DGVIG QT+ WLN S   R  LLA N  R +L+  
Sbjct: 258 NNSMPYDDELVRAIKNFQTQHGLQADGVIGKQTLYWLNQSPYARAKLLAKNTLRQQLFTR 317

Query: 288 TQQDSMIVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHK 347
           T   S +V+N+P F++++ +AG+ +  SKV+VGK +RPTP++++ + S+++NP W VP  
Sbjct: 318 TLPASYLVINIPAFELQFVEAGKVILNSKVIVGKASRPTPLLSSHISSVVLNPQWRVPRT 377

Query: 348 IMVEDILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQ 407
           I+  DI+P +++D  YL +   ++     D   ++ +  +W+ +    FPYRL Q+ G +
Sbjct: 378 IVRRDIMPHIRQDGHYLQDRGFDVYD--YDGARVEHSPQEWQELASSHFPYRLVQRPGAK 435

Query: 408 NALGTYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFA---QTLLANQGI 464
           NALG YKF+  NS ++YLH T    LF    RA SSGCIRVE  E+ A   QT L     
Sbjct: 436 NALGRYKFHFDNSFSVYLHGTSEPSLFKKTDRALSSGCIRVEKVEELARWFQTHLVKDTR 495

Query: 465 TLDDFPVST---QAIALKKRIPVHIIYQTVWYEE-GVLHYRDDIYHYD 508
             D    +T   Q  AL   +PV+ +Y T W ++ G + YR+DIYH +
Sbjct: 496 LWDKLTPNTTQSQWFALSDTMPVYTVYWTAWLDDAGQIQYRNDIYHLE 543