Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 560 a.a., peptidoglycan binding domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  192 bits (489), Expect = 2e-53
 Identities = 138/504 (27%), Positives = 238/504 (47%), Gaps = 40/504 (7%)

Query: 38  NEQITNPALVEQIYHSNNDQLLWSD----------LATANHFEAQLEVIHRASFSPLFSR 87
           N Q+ +  L+ ++Y     Q LW D          + +A+      E  H +    L+  
Sbjct: 46  NTQVISAKLLSRVYQVRQYQPLWQDRDYAGTMLDVIKSADDEGLSKEDYHYSKLVELY-- 103

Query: 88  QLFALKSYRQQDRWHEYDVLATDTLLQY----LSYAEQAPKVGIAWFF-EGQLDQPLAPP 142
           Q  +  +++ + R   ++VL +D ++ Y    L+       +G  W + E  LD      
Sbjct: 104 QQLSASNWQDEYRSSVFEVLLSDGIITYAIHLLNGKVNPSMLGKTWNYDETHLDFDTTLK 163

Query: 143 SEEAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFNEVALYEQMERLKR 202
             E  +  H      ++A L  +  P     Q L Q     +   F+ +   E +    +
Sbjct: 164 QLEEHIKAHTVA--DAIAGLAPKIEPYHQLKQYLAQYKDLAARYPFSPIPYTEVI----K 217

Query: 203 PGDPLSHREALVQRL-------ALVNLDTTSILNDVAYYDASLEKPIKQFQKMHGLQTDG 255
           PG      + +  RL       A    D ++ +N    YD++LE  ++QFQ  H L+ DG
Sbjct: 218 PGSTSPSVQGIATRLTELGYLAASAPADNSAAVNQPLTYDSTLEAAVRQFQTDHSLKADG 277

Query: 256 VIGPQTMKWLNTSVTERLALLALNAERIR-LWPTQQDSMIVVNVPGFDMKYWDAGREVFE 314
           VIG  TM  LN   ++ +  + +N ER R L      + ++VN+ G+++  +      + 
Sbjct: 278 VIGAGTMAALNVPYSQLVDQIRINLERARWLSANLPTNYLIVNLAGYELLLFKDNSLSWR 337

Query: 315 SKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRG 374
           + +++GK    TP+  +KL  +++NPTW VP  I  E I+  ++++ +YL   H +++ G
Sbjct: 338 TDIIIGKINAKTPLFKSKLKYVVVNPTWTVPRSISTE-IINHLRKEPDYLQKKHFKVVEG 396

Query: 375 WSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLF 434
              P  +D + IDW ++  + FPY   Q  G  N+LG  KF  PN  +IYLHDTP+K LF
Sbjct: 397 SGTP--VDASGIDWHSMTRKNFPYWFVQDPGEDNSLGLVKFIFPNQYSIYLHDTPAKSLF 454

Query: 435 NNASRAFSSGCIRVENAEKFAQTLL---ANQGITLDDFPVS---TQAIALKKRIPVHIIY 488
               RAFS GCIRV++    A  LL   AN   +     +S   T+ + L + + + I+Y
Sbjct: 455 EQTDRAFSHGCIRVKDPLVLADKLLSANANWSSSTLSSKLSEGKTENLFLDEPLDILIMY 514

Query: 489 QTVWYEEGVLHYRDDIYHYDALAL 512
            TV  ++G + + +D+Y  D + +
Sbjct: 515 WTVTLKDGKIKFYNDVYKRDPVLI 538