Pairwise Alignments

Query, 299 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 309 a.a., Transcriptional Regulator, AraC family (NCBI) from Rhodospirillum rubrum S1H

 Score = 83.2 bits (204), Expect = 7e-21
 Identities = 76/283 (26%), Positives = 118/283 (41%), Gaps = 21/283 (7%)

Query: 19  REFRSKSQTQEFSCP-WHYHTEYELVLYQNPDQRFVGNYFAGDAIGAVEHNTLLLYGPGL 77
           R FR  S    F    WHYH EYEL    +  +R  G  + G   G  E   L+L GP L
Sbjct: 16  RAFRVYSHGYPFQFSGWHYHPEYEL----HAIRRSSGLCYIGTYAGPFETGNLILTGPNL 71

Query: 78  PHMIA--------GRQLINKAQTLHSTIIWFKQEWLDKLQSVLPQAQALQRLQQHASYGV 129
           PH+          GRQ           ++ F   + +K          L+ L   AS G+
Sbjct: 72  PHVWVTDADGYGDGRQ--GDFIPDRDLVMQFSGAFAEKCLESFADCADLRVLLAQASAGI 129

Query: 130 RLSEQTATRVAELLANVDQQPHSYQSLRVIESLLVMADDAQAQRLSVAPYVMTALTSNSD 189
             SE     VA ++ ++ ++    +     + L  +  D   Q LSV       L     
Sbjct: 130 LFSEAVGEPVARMMEDLRERSGPGRLALFFDILDRLLADKARQPLSVEWQSYQCLQP--- 186

Query: 190 THKKIQLAKQYVEQHYAQAIKITDLCHQLHLSESSAY-RLFEKHYGMSFSEHLKQFRIGK 248
             K++    +++ ++Y +A        +    E SA+ R FE+H   +  E++ + RI K
Sbjct: 187 --KRLDNILKFIAENYNRADLTCGEVARREAMELSAFSRFFERHISCTCIEYINRLRIYK 244

Query: 249 ACELLASSALPIALIAERTGFGNLSNFNRQFKTLKTMTPREFR 291
           AC+LL  +   I ++A   G+  LS FNR F+     +P  FR
Sbjct: 245 ACQLLIETENRITMVAYEVGYDTLSTFNRNFQRYIGSSPSAFR 287